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PLANT PATHOLOGY
The science of Fungi and Plant Diseases
INTRODUCTION
FUNGI (funjee or funjai)
Fungi and Bacteria were in plant kingdom because of:
Spore production
Cell Wall
Lack Plastids
Have Cell walls without cellulose
Have bodies which are filamentous not parenchymatous
Have heterotrophic nutrition
INTRODUCTION
FUNGI..Root of the Word
Fungus: Latin: mushroom, fungus; probably related to Greek
spongos sponge
Mycology: Greek Mykes : Cap or Mushroom
INTRODUCTION
WHAT IS FUNGI:
Fungi:
A taxon (pl. taxa) is any group of organisms that is given a formal
taxonomic name.
A monophyletic taxon is one that includes a group of organisms
descended from a single ancestor.
Monophyletic taxon : A group composed of a collection of
organisms, including the most recent common ancestor of all those
organisms and all the descendants of that most recent common
ancestor. A monophyletic taxon is also called a clade.
A polyphyletic taxon is composed of unrelated organisms
descended from more than one ancestor.
INTRODUCTION
INTRODUCTION
INTRODUCTION
WHAT IS FUNGI:
About 80 000 to 120 000 species of fungi have been described to
date.
The total number of species is estimated at around 1.5 million
(Hawksworth, 2001).
Fungi are not a natural, monophyletic group;
They are classified together only provisionally until we have enough
information to understand their true evolutionary relationships.
INTRODUCTION
WHAT IS FUNGI--Definition
eukaryotic, spore-bearing, achlorophyllous organisms
that generally reproduce sexually and asexually and
whose usually filamentous, branched somatic structures are
typically surrounded by cell walls containing chitin or
cellulose, or both of these substances,
together with many other complex organic molecules.
INTRODUCTION
WHAT IS FUNGI--Definition
True fungi are defined as
1. eukaryotic organisms
2. lacking plastids,
3. with absorptive nutrition,
4. reproducing both sexually and asexually by spores and
5. hyphae surrounded by cell walls containing chitin and glucans, and
6. mitochondria with flattened cristae and peroxisomes.
INTRODUCTION
WHAT IS FUNGI:
1. Nutrition. Heterotrophic (lacking photosynthesis), feeding by
absorption rather than ingestion.
2. Vegetative state. On or in the substratum, typically as a nonmotile mycelium of hyphae showing internal protoplasmic
streaming. Motile reproductive states may occur.
3. Cell wall. Typically present, usually based on glucans and chitin,
rarely on glucans and cellulose (Oomycota).
4. Nuclear status. Eukaryotic, uni- or multinucleate, the thallus
being homo- or heterokaryotic, haploid, dikaryotic or diploid, the
latter usually of short duration (but exceptions are known from
several taxonomic groups).
INTRODUCTION
WHAT IS FUNGI:
5. Life cycle. Simple or, more usually, complex.
6. Reproduction. The following reproductive events may occur: sexual (i.e. nuclear
fusion and meiosis) and/or parasexual (i.e. involving nuclear fusion followed by
gradual de-diploidization) and/or asexual (i.e. purely mitotic nuclear division).
7. Propagules. These are typically microscopically small spores produced in high
numbers. Motile spores are confined to certain groups.
8. Sporocarps. Microscopic or macroscopic and showing characteristic shapes but
only limited tissue differentiation.
9. Habitat. Ubiquitous in terrestrial and freshwater habitats, less so in the marine
environment.
10. Ecology. Important ecological roles as saprotrophs, mutualistic symbionts,
parasites, or
hyperparasites.
11. Distribution. Cosmopolitan.
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
The terms soma and somatic (Gr. soma, somatos = body) are
equivalent to the term vegetative in plants.
As fungi are not plants, we will try not to use the term vegetative in
reference to these organisms.
Thallus (pi. thalli) also is used to refer to the entire body of the
fungus, a term that also has been applied to bryophytes and algae
as well.
The filaments or hyphae grow by apical growth.
Most part of a fungus are capable of growth.
Almost any part of a fungus is usually able to produce new growing
point and to start a new individual.
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
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THALLUS ORGANISATION
Yeast Cells
Hyphae
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THALLUS ORGANISATION
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THALLUS ORGANISATION
In the most complex fungi the septum wall near the central pore is
swollen or inflated to form a barrel-shaped structure.
This type of septum is referred to as a dolipore septum (L. dolium
= a large jar or cask, i.e., barrel).
In most instances a membranous structure called the septal pore
cap or parenthosome is present in the cytoplasm on either side of
a dolipore
septum.
Depending
upon
the species
involved, the septal pore cap may
be perforate or imperforate.
Septa with multiple, small
micropores or plasmodesmata-like
channels (Fig. 2-6) also have been
reported in a few fungi that are not
closely related to each other.
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
ROLES OF SEPTA
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
6. Presence of pigments such as melanin in the wall can protect the cells
against ultraviolet radiation or the lytic enzymes of other organisms.
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THALLUS ORGANISATION
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THALLUS ORGANISATION
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THALLUS ORGANISATION
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THALLUS ORGANISATION
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the two main wall synthetic enzymes, chitin synthase and glucan
synthetase, are integral membrane proteins;
that are anchored in the membrane in such a way that they produce
polysaccharide chains from the outer membrane face;
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
THE NUCLEUS
The hyphae of fungi almost invariably contain large numbers of nuclei.
In aseptate forms, nuclei generally appear to be distributed randomly
throughout the cytoplasm of an actively growing hypha.
In septate forms, individual hyphal compartments, may, depending
upon the species involved and the phase of the life cycle examined,
routinely contain one, two, or many nuclei.
Some species possess special mechanisms that ensure that only two
genetically compatible nuclei are present in each compartment of a
hypha.
Most fungi are haploid with chromosome numbers ranging from
about 6 to 20 (Table 3.3),
but the Oomycota are diploid, and some other fungi can alternate
between haploid and diploid generations.
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
THE NUCLEUS
Haploid chromosome numbers in some fungi
Myxomycota Dictyostelium discoideum
Ascomycota
Neurospora crassa
Ascomycota
Ascomycota
Saccharomyces cerevisiae
Basidiomycot
Schizophyllum commune
a
Basidiomycot
Ustilago maydis
a
16
6
20
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CHARACTERS
THALLUS ORGANISATION
THE NUCLEUS
The hyphae of fungi almost invariably contain large numbers of nuclei.
In aseptate forms, nuclei generally appear to be distributed randomly
throughout the cytoplasm of an actively growing hypha.
In septate forms, individual hyphal compartments, may, depending
upon the species involved and the phase of the life cycle examined,
routinely contain one, two, or many nuclei.
Some species possess special mechanisms that ensure that only two
genetically compatible nuclei are present in each compartment of a
hypha.
Most fungi are haploid with chromosome numbers ranging from
about 6 to 20 (Table 3.3),
but the Oomycota are diploid, and some other fungi can alternate
between haploid and diploid generations.
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
SIZE
SHAPE
Generally spherical to ovoid in shape.
FUNGI GENERAL
CHARACTERS
THALLUS ORGANISATION
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CHARACTERS
FUNGAL ORGANELLES
Mitochondria
Numerous per hypha
Thread-like or lobed
Cristae flattened
ribosomes,
endoplasmic reticulum (ER),
vacuoles,
lipid bodies,
glycogen storage particles,
Golgi bodies,
microbodies,
filasomes,
microtubules and microfilaments.
THALLUS ORGANISATION
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CHARACTERS
THALLUS ORGANISATION
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THALLUS ORGANISATION
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THALLUS ORGANISATION
Vacuoles
Rounded structures in the older regions of hyphae
Recently it has shown that there is also a tubular vacuolar system
extending into the tip cells.
It is an extremely dynamic system, consisting of narrow tubules which can
dilate and contract, as inflated elements travel along them in a peristaltic
manner.
functions:
I. Storage of compounds: accumulate phosphates in the form of
polyphosphate. storage of calcium, which can be released into the
cytoplasm as part of the intracellular signaling system.
II. Recycling of cellular metabolites: Vacuoles contain proteases for
breaking down cellular proteins and recycling of the amino acids.
III. Regulation of cellular pH
FUNGI GENERAL
CHARACTERS
GROWTH AND NUTRITION
The fungi are heterotrophs
They are unable to fix carbon
Exhibit absorptive nutrition.
Nutrients that enter their bodies must pass through the cell wall and plasma
membrane.
Fungi are described as organisms whose "stomachs" are outside their
bodies.
They do not ingest foods as animals do.
Fungi release digestive enzymes into the external environment.
Enzymes break down large and relatively insoluble molecules into smaller,
soluble molecules that then can be absorbed.
Free water is required for diffusion of soluble nutrients into the cells.
Without some free water, fungi cannot carry out normal metabolism.
FUNGI GENERAL
CHARACTERS
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1. FOOD
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2. MOISTURE
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3. TEMPERATURE
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4. pH
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5. Oxygen
Ethyl alcohol or
Lactic acid.
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NUTRITION
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2. PARASITES
A considerable number of fungi live as parasites (Gr. parasitos = eating
beside another) on plants, animals, or in some cases even other fungi.
An organism that lives in or on another organism (its host) and
benefits by deriving nutrients at the host's expense.
A parasite can be defined as an organism that obtains some or all
of its nutrients from the living tissues of another organism, while
being in intimate association with it.
The majority of parasitic fungi are, however, capable of living on dead
organic materials (grow on synthetic media).
Those forms that fail to grow on synthetic media or that are always parasitic
in nature are described as either obligate parasites or biotrophs.
Those capable of growing parasitically or of living saprobically on dead
organic matter are, referred to as either facultative parasites or facultative
saprobes.
FUNGI GENERAL
CHARACTERS
Broadly, parasites are of two types based on the way they obtain their
nutrients.
Necrotrophic parasites (Gr. nekros = death; trophein = to nourish)
Also called PERTHOTROPHS or NECROTROPHS
the parasite kills the living host cells in advance of its entry, by producing toxins
or degradative enzymes and then absorbing released nutrients and growing between
and into dead and dying cells.
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CHARACTERS
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3. SYMBIONTS
(a) Lichens:
This is an association of fungi (mycobiont) with algae and
cyanobacteria (photobionts).
In symbiosis, the fungus gets carbohydrates from photobionts.
Photobionts receive protection and a receptive substrate for
growth from the surrounding fungus.
(b) Mycorrhizae:
This is an association of fungi with roots of higher plants.
The fungal symbiont in a mycorrhiza gets carbohydrates from
plant host, and the plant gets minerals from the fungus.
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In the true fungi it may or may not involve specialized sex cells
and sex organs.
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ASEXUAL REPRODUCTION
Asexual reproduction as the nonsexual production of specialized
reproductive cells such as spores.
A broader definition: Any method of propagation of new
individuals:
I.
FUNGI GENERAL
CHARACTERS
ASEXUAL REPRODUCTION
In accordance with this concept, the asexual methods of
reproduction commonly found in fungi may be summarized as
follows:
(1) fragmentation of the soma, each fragment growing into a new
individual;
(2) fission of somatic cells into daughter cells;
(3) budding of somatic cells or spores, each bud producing a new
individual; and
(4) production of mitotic spores, each spore usually germinating
to form a germ tube that grows into the mycelium.
FUNGI GENERAL
CHARACTERS
FRAGMENTATION
Some fungi employ fragmentation of hyphae as a normal means of
propagation.
Fragmentation may occur accidentally by the tearing off of parts of
the mycelium through external forces.
Under favorable conditions such bits of mycelium will start a new in
dividual.
as in a majority of the filamentous fungi.
ARTHROSPORES
Hyphae of some species routinely break up into their component
cells that then behave as spores.
These spores are known as arthrospores (Gr. arthron = joint +
spora = seed, spore) or thallic conidia.
FUNGI GENERAL
CHARACTERS
ARTHROSPORES
FUNGI GENERAL
CHARACTERS
CHLAMYDOSPORES
If the cells become enveloped in a thick wall before they separate
from each other or from other hyphal cells adjoining them, they
often are called chlamydospores (Gr. chlamys mantle +
spora = seed, spore).
FISSION
It is the simple splitting of a cell into two daughter cells by
constriction and
The formation of a cell wall
It is found many forms including some yeasts.
FUNGI GENERAL
CHARACTERS
BUDDING
Budding, involves the production of a small outgrowth (bud) from a
parent cell.
As the bud is formed, the nucleus of the parent cell divides mitotically
One daughter nucleus migrates into the bud.
The bud increases in size while still attached to the parent cell and
Eventually breaks off and forms a new individual.
Chains of buds, forming a short mycelium
Which is known as pseudomycelium
Budding takes place in the majority of yeasts
Also in many other fungi
Such as dimorphic
FUNGI GENERAL
CHARACTERS
SPORES
A spore (Gr. spora = seed, spore) is a:
minute,
simple propagating unit
without an embryo that
serves in the production of new individuals.
The most common method of asexual reproduction in fungi is by
means of spores.
FUNGI GENERAL
CHARACTERS
SPORES
Color
Hyaline (Gr. hyalinos made of glass, transparent, i.e., colorless)
Green,
Yellow,
Orange,
Red
Brown
Black
FUNGI GENERAL
CHARACTERS
Size
Minute to large;
Shape
Globose
Oval,
Oblong,
Needle-shaped
Helical
Number Of Cells
From one to many
i.e. unicellular to multicellular
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Sporangium
FUNGI GENERAL
CHARACTERS
SEXUAL REPRODUCTION
Sexual reproduction in fungi, involves the union of two
compatible nuclei.
Like in other living organisms
Consists of three distinct phases.
1. Plasmogamy
2. Karyogamy
3. Meiosis
FUNGI GENERAL
CHARACTERS
SEXUAL REPRODUCTION
Plasmogamy (Gr. plasma = a molded object, i.e., a being + gamos
marriage, union)
A union of two protoplasts or fusion of two cells
It brings the nuclei close together within the same cell.
Karyogamy
The fusion of the two nuclei is
It is the second phase of sexual reproduction.
Karyogamy follows plasmogamy almost immediately in some species
In others these two events are separated in time and space
Plasmogamy results in a binucleate cell containing one nucleus from
each parent.
FUNGI GENERAL
CHARACTERS
ii. by the separation of the resulting sister nuclei into the two daughter
cells.
FUNGI GENERAL
CHARACTERS
1. Oospores,
2. Zygospores,
3. Ascospores, and
4. Basidiospores.
. Almost all true fungi exist in either the haploid or the dikaryotic
condition
. The diploid phase being represented only by the zygote.
. A few Chytridiomycota species exhibit an alternation of generations
. With a haploid phase alternating with a diploid phase.
. In contrast, in Oomycota diploid nuclei occur throughout most of the life
cycle.
FUNGI GENERAL
CHARACTERS
On the basis of the sex, most fungi are classified into three
categories:
1. Monoecious - (Hermaphrodites): In which each thallus bears
both male and female sex organs
. That may or may not be compatible.
2. Dioecious: In which some thalli bear only male and some bear
only female sex organs. Very few dioecious fungi have been
discovered.
3. Sexually undifferentiated: Morphologically undifferentiated
male or female,
. Perhaps majority of fungi exhibit this kind of sexual process.
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CHARACTERS
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CHARACTERS
Heterothallic fungi:
Physiological heterothallism
Which depends on the genetic factors conferring compatibility and
may lack differentiated sexual organs (Hymenomycetes - hyphal fusion)