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International Journal of Pediatric Otorhinolaryngology


journal homepage: www.elsevier.com/locate/ijporl

Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa


district, Kenya: A point prevalence study
Dickens S.O. Aduda a,*, Isaac M. Macharia a, Peter Mugwe a, Herbert Oburra a, Brian Farragher b,
Bernard Brabin c, Ian Mackenzie d
a
University of Nairobi, School of Health Sciences, Department of Surgery, ENT/Head & Neck Surgery, Kenya
b
Liverpool School of Tropical Medicine, Medical Statistics, United Kingdom
c
Liverpool School of Tropical Medicine, Department of Tropical Paediatrics, United Kingdom
d
Liverpool School of Tropical Medicine, Aintree Hospital Foundation Trust, United Kingdom

A R T I C L E I N F O A B S T R A C T

Article history: Objectives: To identify by type and sensitivity to drugs the bacteria found in ears of school-going children
Received 11 January 2013 with chronic otitis media in Garissa district.
Received in revised form 12 April 2013 Methods: Study design: This was a descriptive prevalence study of CSOM bacterial flora in eligible ears
Accepted 15 April 2013
conducted among a cohort of children attending public and private primary as well as Islamic religious
Available online xxx
schools, screened for chronic ear discharge in Garissa district, Kenya. Procedure and bacteriological
techniques: We used sterile swab-sticks to collect a specimen of the discharge from eligible ears of
Keywords:
consenting pupils at the induction stage of the zinc supplementation trial for treatment of chronic
Bacteriology
Aerobic and anaerobic bacteria
suppurative otitis media conducted between January and July 2010. All pupils below 18 years present on
Chronic otitis media day of visit were eligible. Both aerobic and anaerobic bacterial cultures were done to identify clinically
Antibiotic sensitivity and epidemiologically important bacteria. Sensitivity tests were based on disc diffusion methods.
School-going children Results are presented as frequencies and proportions.
Kenya Results: Of the pupils seen, 61% were still in pre- or lower primary school. Majority were aged 13 and 14
years. Of the 261 ear swab samples processed, 336 isolates – either in mixed or pure flora – were
identified, being almost exclusively aerobes. Proteus spp., Enterococcus, Staphylococcus aureus and
Pseudomonas spp. were isolated in 32.7%, 28.6%, 12.8% and 11.3% respectively. Proteus was susceptible to
majority of the antibiotics tested for, while Enterococcus was poorly susceptible.
Conclusions: Aerobic bacteria were most prevalent in this study. Several of the bacteria identified are
known to require iron for their growth. This may be important for CSOM treatment if biofilm formation is
involved in pathogenesis. Majority of the isolates were susceptible to basic antibiotics compared to
Enterococcus bacteria. This portends an important consideration for clinical management and
therapeutic decision-making. Additionally, given the prevalence of Enterococcus bacteria, which is an
indicator of faecal contamination of the environment, there is need to consider relevant public health
components in managing childhood CSOM besides the clinical ones alone.
ß 2013 Elsevier Ireland Ltd. All rights reserved.

1. Introduction disease associated with irreversible pathology of the middle ear


tissues [1]. The prevalence of CSOM and its complications are
Chronic suppurative otitis media (CSOM) is a persistent, poorly documented globally, but it is estimated that approximately
insidious ear condition characterised by discharge into the 65–330 million individuals, especially children are affected [2]. Of
external ear canal continuing for over two weeks and associated these, 60% have significant hearing loss, mainly as a result of long-
with perforation of the tympanic membrane. It is a multietiologic term suppuration, persisting perforation of the tympanic mem-
brane and disruption of the middle ear structures due to
complications. Fatalities attributable to CSOM are estimated at
28,000 per year [1]. Although poorly understood, risk factors
* Corresponding author at: University of Nairobi, Department of Surgery, ENT/ commonly attributed to CSOM include persistent local gram
Head & Neck Surgery, P.O. Box 6734, Kondele, Kisumu, Kenya.
positive and/or negative bacterial infection, recurrent acute otitis
Tel.: +254 722385291.
E-mail addresses: omondisda@yahoo.com, omondisda@gmail.com media, recurrent upper respiratory infections, poor hygiene,
(Dickens S.O. Aduda). trauma to the middle ear and tympanostomy tube insertion

0165-5876/$ – see front matter ß 2013 Elsevier Ireland Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.ijporl.2013.04.011

Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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[3,4]. Nutritional deficiencies may also be important [5,6]. The 2. Methods


current standard treatment regime for CSOM [7] is significantly
effective in enhancing resolution in ear discharge as well as better 2.1. Study design
hearing. However, in 41% of the children, ear discharge persists [7].
The present study sought to identify by type the bacteria found in We performed a school-based screening exercise over a period
school-going children with chronic ear discharge, and their of eight weeks in early 2010 to identify the proportion of pupils
antibiotic sensitivity patterns. who had chronic ear discharge, lasting 14 days or longer, among a
Presence of bacterial infection in the middle ear considerably cohort of primary school-going children in Garissa district. We
prolongs or may complicate the healing process, but their specific then took aural swabs from the eligible ears of consenting pupils
role in the pathogenesis of CSOM is hitherto poorly understood. for microbiology. The main outcome measures were types of
Some studies indicate that the occurrence of clinical and bacteria isolated and their susceptibility to antibiotics. The study
pathological complications of CSOM is related to the bacteriologic was part of a randomised clinical trial designed to determine the
types present [8,9]. Proliferation of these pathogens in the middle role of zinc in the treatment of CSOM among school-going children
ear may be perpetuated by chronic inflammatory processes or high in Garissa district, Kenya.
humidity [1]. It is postulated that the mode of the middle ear
infection is by translocation of bacteria from the external ear, since 2.2. Setting
the bacteria isolated from middle ear exudates have been observed
to be similar to those from the external auditory canal regardless of The study was conducted among primary school-going pupils
the sampling techniques used [10]. The most commonly encoun- attending public and private primary schools as well as Islamic
tered bacteria patterns in CSOM include: Pseudomonas aeroginosa, religious schools (Madrasas and Duksis) who had been screened for
Streptococcus pyogenes, Staphylococcus aureus, Klebsiella species, CSOM within Garissa district. This is an arid rural district in the
Proteus species (aerobes) and Bacteriodes, Peptostreptococcus and north eastern part of Kenya (Fig. 1).
Proprionibacterium (anaerobes) while those often observed in Informed consent for school participation was obtained from
acute suppurative otitis media (ASOM) are Streptococcus pneumo- school staff and representatives of parent–teacher associations,
neae, Haemophilus influenza, S. aureus and Micrococcus catarrhalis while each child assented to assessments after their legal
[10–14]. guardian(s) were taken through and signed a witnessed written
The relative importance of the bacterial isolates can be informed consent.
determined by considering both the level of bacterial counts The ear swab specimens were collected at the induction stage
and the pathological importance of the strains obtained. Poly- when eligible pupils were being enrolled into the clinical trial for
bacterial recoveries involving both aerobes and anaerobes are zinc supplementation in the treatment of chronic suppurative
commonly reported in samples obtained from ears with CSOM otitis media. The zinc supplementation trial was conducted
although prevalence relative to pure cultures widely varies. S. between January and July 2010 (during the first and second
aureus is the commonest pathogen in pure samples. Anaerobes school terms).
rarely occur singly in pure cultures signifying a potentially
symbiotic, or synergistic suppurative process [8]. Reported
occurrence of anaerobic bacteria is variable, probably due to
differences in bacteriological techniques used, as well as variable
study aims and epidemiological methods [8–10,13]. Whereas the
prevalence of anaerobic bacteria isolates was previously reported
as low [8], more recent observations report a wide range from 8% to
74% [9–12,14]. The anaerobic isolates commonly observed in ear
swabs are similar to those predominant in the oral flora as well as
those found in chronic sinusitis and head/neck abscesses [11].
However more scrupulous procedural standards are required for
collecting, transporting and processing the specimen to ensure the
validity of results reported [15].
Bacteriological studies of CSOM are important for determin-
ing effective antibiotic choices and surveillance of bacterial
patterns and their relative sensitivities. This is essential for risk
analysis and planning mitigation and logistics strategies.
Antibiotic treatments when given are directed at eradication
of pathogens from the middle ear cleft. Failure of treatment may
be associated with emergence of resistance, or proliferation of
new bacteria in the middle ear [11]. Resistance may occur due to
increased use of, or inappropriate exposure, to antibiotics.
Presence of b-lactamase enzyme activity has been reported to
be responsible for bacterial resistance to penicillin and
cephalosporin antimicrobials in more than half of the middle
ear aspirates [11].
The aim of the present study was to determine the point
prevalence of bacteria associated with chronic suppurative otitis
media in school-going Kenyan children. Specific objectives were to
identify bacteria isolates from eligible ears of children with chronic
suppurative otitis media and to study the antibiotic susceptibility
pattern of a sample of bacterial isolates to the commonly used Fig. 1. Map of the greater Garissa district.
antimicrobial agents. Source: http://www.kenyampya.com/index.php?county=Garissa.

Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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2.3. Inclusion and exclusion criteria and Technology and other collaborating institutions as required.
The study was part of the chronic otitis media study in Kenya
Only school-going pupils aged between 5 and 18 years with (Clinical Trial number_ISRCTN86106121; more details about this
perforated ear drums and visible suppuration in the external ear trial online: http://www.controlled-trials.com/ISRCTN86106121).
canal for the past two weeks or more present at study induction
time and were eligible. Presence of cholesteatoma, mastoid abscess 2.6. Statistical analysis
or other conditions that required urgent surgery or other medical
attention was causes for exclusion. Pupils who had received or Descriptive methods were used and frequency tables and charts
were receiving any medication prior to enrolment were also plotted on Microsoft excel.
excluded. Ear swabs were collected if both the parent(s) and the
child had consented. 3. Results

2.4. Sampling and bacteriological techniques 3.1. Socio-demographic characteristics of the participants: study
population
After obtaining consent/assent from identified pupils pure tone
audiometry was carried out by the project nurse to establish hearing More than half (61.5%) of all the pupils assessed for bacterial
thresholds before treatment commenced. After audiometric tests, the ear infection were still in lower primary and the nursery school:
ENT Clinical Officer performed bilateral otoscopy and collected a in nursery section (28%) and lower primary 1–3 (33.5%).
single specimen from the eligible ear(s) with commercially prepared Majority of them were between age 13 and 14 years with
sterile fine cotton swabs from the eligible ear(s) under aseptic slightly more of males. The age and sex distribution of patients
conditions. Screw-tightened collection bottles containing Robertson are presented in Fig. 2.
Cooked Meat (RCM) medium were doubly used as transport medium Of the 9100 pupils screened, 300 had suppurative middle ear
and to facilitate multiplication of the organisms present. The screw discharge, representing a CSOM prevalence of about 3.3% in this
capped bottles were further sealed with ‘parafilm’ to ensure they population. A total of 261 samples were successfully cultured out
were airtight. At the end of each field visit – on average 6 h post of which 84 sensitivities were completed (being a sample from the
collection – we transported the specimen in cooler boxes, without total isolates considered for bacterial susceptibility tests due to
icepacks, to the nearby provincial hospital laboratory, located within lack of sensitivity discs. The samples were selected sequentially
the main town centre. The cooler boxes were used to protect the from each batch that had pure and mixed cultures, taking from the
specimen from ultraviolet rays due to direct exposure to sunlight in first available one in each case). No growth was obtained from 12
the prevailing hot environment. The microbiologist at the provincial (4.6%) of the cultures. There were 336 isolates identified, all of
hospital laboratory incubated all received specimen for 48 h before them aerobes with no anaerobes obtained, except for one case
shipping them to the University of Nairobi Laboratory for culture and
sensitivity analysis.
Processing of the specimen for culture was done for both
aerobic and anaerobic bacteria, according to the standard
operating protocols for the University of Nairobi/Kenyatta Hospital
Laboratory. Specimens were inoculated onto two blood agar plates
as follows: (i) 1 blood agar plus MacConkey agar for aerobic
incubation and (ii) 1 blood agar plate containing a Metronidazole
disc for anaerobic incubation. The plates were incubated at 37 8C.
Anaerobic incubation was done using the GasPak jar methods and
was read after 48–72 h, while aerobic cultures were read within
18–24 h. Any growths obtained from the anaerobic cultures were
further sub-cultured onto fresh blood agar and MacConkey agar
and incubated aerobically to rule out presence of facultative
aerobes. All clinically and epidemiologically important bacteria
were identified from positive cultures by their colonial morpholo-
gy on the respective media and Gram-staining reaction and further
Fig. 2. Age–sex distribution of pupils with CSOM from whom ear swabs were taken
confirmed by the pattern of reaction using standard biochemical for culture and sensitivity (N = 261). Error bars with standard error.
test methods using [15]. Negative cultures were also reported.
Sensitivity tests based on the disc diffusion methods [16] were Table 1
conducted using commercially available kits. The following Types of pathogens isolated and prevalence in the isolates.
antibiotics were tested using standard laboratory procedures:
Pathogen N = 348 Total (%)
sulphamethoxazole, gentamicin, chloramphenical, ciprofloxacin,
ceftazidime, amikacin, augmentin, doxycycline, ampicilin, linco- (%) – in single (%) – in mixed
isolates isolates
mycin, polymixin B, cephalothin, suprapen and framicetin. These
drugs are widely used in both the out-patient and in-patient units 1. Proteus 67 19.25% 43 12.4% 31.7
2. Enterococcus spp. 40 11.49% 56 16.1% 27.6
in Kenya. Inhibition zones in each case were compared against that
3. S. aureus 27 7.8% 16 4.6% 12.4
of the control organisms. The results were reported on the 4. Pseudomonas spp. 20 5.7% 18 5.2% 10.9
laboratory request forms for each respective organism as either 5. E. coli 10 2.9% 15 4.3% 7.2
‘sensitive’ or resistant. 6. Klebsiella spp. 2 0.6% 10 2.9% 3.5
7. Anthracoides 1 0.3% 9 2.6% 2.9
8. Diptheroides 1 0.3% 1 0.3% 0.6
2.5. Regulatory approval 9. Clostridium tetani 1 1 0.3 0.3

Total 168 48.3% 168 48.3% 96.6


All regulatory approvals for the study were granted by Kenyatta
No growth was obtained in 12 (3.4%) cultures 100%
National Ethics Committee and Kenya National Council of Science

Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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Table 2
Distribution analysis of bacterial susceptibility to selected antibiotics.

Antibiotic Sensitivity Proteus spp. Enterococcus S. aureus Pseudomonas spp. E. coli Klebsiella spp.
N (%) N (%) N (%) N (%) N (%) N (%)

Sulphamethoxazole Sensitive 20 (71) 0 4 (100) 1 6 (85.7) 5 (100)


Resistance 8 (29) 3 (100) 0 0 1 (14.3) 0

Gentamicin Sensitive 24 (85.7) 1 3 (60) 1 6 (85.7) 5 (100)


Resistance 4 (14.3) 0 2 (40) 0 1 (14.3) 0

Chloramphenical Sensitive 23 (79.3) 17 (73.9) 5 (83.3) 8 (80) 7 (100) 5 (100)


Resistance 6 (20.7) 6 (26.1) 1 (16.7) 2 (20) 0 0

Ciprofloxacin Sensitive 24 (92.3) 15 (65.2) 3 (100) 7 (70) 6 (85.7) 4 (80)


Resistance 2 (7.7) 8 (34.8)) 0 3 (30) 1 (14.3) 1 (20)

Ceftazidime Sensitive 15 (93.8) 0 3 (100) 0 5 (83.3) 5 (100)


Resistance 1 (6.2) 0 0 0 1 (16.7) 0

Amikacin Sensitive 21 (87.5) 1 2 (100) 1 3 (100) 3 (100)


Resistance 3 (12.5) 0 0 1 0 0

Augmentin Sensitive 0 11 (52.4) 1 7 (88) 0 0


Resistance 0 10 (47.6) 0 112) 0 0

Doxycycline Sensitive 0 6 (37.5) 0 5 (63) 0 0


Resistance 0 10 (62.5) 1 3 (37) 0 0

Ampicilin Sensitive 0 2 0 2 (50) 0 0


Resistance 0 1 0 2 (50) 0 0

Lincomycin Sensitive 0 4 (25) 1 (33.3) 6 (75) 0 0


Resistance 0 12 (75) 2 (66.7) 2 (25) 0 0

Polymixin B Sensitive 0 0 0 0 0 0
Resistance 4 (100) 0 1 0 2 (100) 0

Cephalothin Sensitive 0 1 0 0 0 0
Resistance 0 0 0 0 0 0

of Clostridium tetani. Table 1 shows the frequency distribution of the lookout for symptoms as persistent otorrhoea is a high risk
the isolates. The commonest bacteria found were Proteus spp. factor for occurrence of otogenic tetani [19,20]. Children from low
(31.7%), Enterococcus (27.6%), S. aureus (12.4%) and Pseudomonas socio-economic regions may be more susceptible [19,20].
spp. (10.9%). Of the isolates recovered, only 84 (half of each from In this study cohort no related complications of CSOM were
pure and mixed bacterial isolations) were sampled for sensitivity observed, although in majority of the cases, presence of bacteria
analyses. The drugs tested were: sulphamethoxazole, gentamicin, was demonstrated. This is similar to other studies [8] and which
chloramphenical, ciprofloxacin, ceftazidime, amikacin, augmentin indicates the overwhelming importance of bacterial activity in
(amoxiclav), doxycycline, ampicilin, lincomycin, polymixin B and CSOM. The higher prevalence of bacterial infection among children
cephalothin. On average, Proteus showed susceptibility to anti- aged 13–14 years (with similar male to female ratio) in these
biotics tested for in 81.9% of the cases, while Enterococcus was children was unexplained. The commonest bacteria identified
susceptible in 53.7% of the tests, which was the lowest across the were Proteus spp. and Enterococcus. This is similar to a study in
sensitivity tests (Table 2). Specifically, Enterococcus was only Malawi which also reported increased prevalence of Proteus and
moderately susceptible to ciprofloxacin and augmentin (amox- Enterococci [21]. However, in a study reported by Moshi et al. [22],
iclav) – the drugs of choice in this context, but largely resistant to and conducted among primary school going children in Tanzania,
lincomycin, doxicycline and sulphamethoxazole. Klebsiella, Escher- similar bacterial strains including Pseudomonas aeruginosa (51.7%),
ichia coli and Proteus were highly sensitive to all the drugs tested S. aureus (17.2%), Proteus mirabilis (13.2%), Klebsiella spp. (8.0%) and
for. E. coli (5.8%) were isolated, but with varying prevalence from the
present study. Enterococci were also not reported in this series. In a
4. Discussion retrospective review of 375 ear swab specimen from clients
attending ENT clinic in Ilorin Nigeria, with a participant age range
Understanding the bacterial patterns prevalent in the commu- of 8 months–70 years, predominant prevalence of P. aeruginosa,
nity is critical for effective planning of treatment interventions and Proteus spp. and S. aureus was reported [23]. This indicates existing
supplies. In routine ear care, pus swabs are not customarily variations in microbial prevalence within given regions which may
obtained from patients suffering from chronic suppurative otitis be due to unique epidemiological or methodological differences.
media (CSOM) in our context, unless in protracted or recurrent However, it is not clear whether period difference or seasonal
cases as well as when clinical exacerbations of CSOM or its variations contribute to the prevailing bacterial patterns. Never-
complications occur. These events are more likely to occur from theless, some studies have indicated that increasing colonization
bacterial infection, although the role of biofilms has also been by enteric bacteria is more likely with warmer temperatures [24].
adduced [17]. For example, S. aureus has been frequently observed Another factor which should be considered in relation to
in cholesteatomas, while Proteus has been implicated in extra- bacterial prevalence estimates is the subjects iron status. This is
cranial and intra-cranial complications of chronic suppurative because several of the bacteria identified are known to require iron
otitis media [18]. An isolate of C. tetani was obtained from culture for their growth. This may also relate to biofilm production which
and sensitivity. The occurrence of otogenic tetani is rarely reported can influence bacterial growth [25]. Bacterial biofilms have been
in literature [19]; however it is necessary for practitioners to be on described as a growth mode specialised for long term colonization

Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011

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