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Article history: Objectives: To identify by type and sensitivity to drugs the bacteria found in ears of school-going children
Received 11 January 2013 with chronic otitis media in Garissa district.
Received in revised form 12 April 2013 Methods: Study design: This was a descriptive prevalence study of CSOM bacterial flora in eligible ears
Accepted 15 April 2013
conducted among a cohort of children attending public and private primary as well as Islamic religious
Available online xxx
schools, screened for chronic ear discharge in Garissa district, Kenya. Procedure and bacteriological
techniques: We used sterile swab-sticks to collect a specimen of the discharge from eligible ears of
Keywords:
consenting pupils at the induction stage of the zinc supplementation trial for treatment of chronic
Bacteriology
Aerobic and anaerobic bacteria
suppurative otitis media conducted between January and July 2010. All pupils below 18 years present on
Chronic otitis media day of visit were eligible. Both aerobic and anaerobic bacterial cultures were done to identify clinically
Antibiotic sensitivity and epidemiologically important bacteria. Sensitivity tests were based on disc diffusion methods.
School-going children Results are presented as frequencies and proportions.
Kenya Results: Of the pupils seen, 61% were still in pre- or lower primary school. Majority were aged 13 and 14
years. Of the 261 ear swab samples processed, 336 isolates – either in mixed or pure flora – were
identified, being almost exclusively aerobes. Proteus spp., Enterococcus, Staphylococcus aureus and
Pseudomonas spp. were isolated in 32.7%, 28.6%, 12.8% and 11.3% respectively. Proteus was susceptible to
majority of the antibiotics tested for, while Enterococcus was poorly susceptible.
Conclusions: Aerobic bacteria were most prevalent in this study. Several of the bacteria identified are
known to require iron for their growth. This may be important for CSOM treatment if biofilm formation is
involved in pathogenesis. Majority of the isolates were susceptible to basic antibiotics compared to
Enterococcus bacteria. This portends an important consideration for clinical management and
therapeutic decision-making. Additionally, given the prevalence of Enterococcus bacteria, which is an
indicator of faecal contamination of the environment, there is need to consider relevant public health
components in managing childhood CSOM besides the clinical ones alone.
ß 2013 Elsevier Ireland Ltd. All rights reserved.
0165-5876/$ – see front matter ß 2013 Elsevier Ireland Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.ijporl.2013.04.011
Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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PEDOT-6611; No. of Pages 5
2 D.S.O. Aduda et al. / International Journal of Pediatric Otorhinolaryngology xxx (2013) xxx–xxx
Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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PEDOT-6611; No. of Pages 5
D.S.O. Aduda et al. / International Journal of Pediatric Otorhinolaryngology xxx (2013) xxx–xxx 3
2.3. Inclusion and exclusion criteria and Technology and other collaborating institutions as required.
The study was part of the chronic otitis media study in Kenya
Only school-going pupils aged between 5 and 18 years with (Clinical Trial number_ISRCTN86106121; more details about this
perforated ear drums and visible suppuration in the external ear trial online: http://www.controlled-trials.com/ISRCTN86106121).
canal for the past two weeks or more present at study induction
time and were eligible. Presence of cholesteatoma, mastoid abscess 2.6. Statistical analysis
or other conditions that required urgent surgery or other medical
attention was causes for exclusion. Pupils who had received or Descriptive methods were used and frequency tables and charts
were receiving any medication prior to enrolment were also plotted on Microsoft excel.
excluded. Ear swabs were collected if both the parent(s) and the
child had consented. 3. Results
2.4. Sampling and bacteriological techniques 3.1. Socio-demographic characteristics of the participants: study
population
After obtaining consent/assent from identified pupils pure tone
audiometry was carried out by the project nurse to establish hearing More than half (61.5%) of all the pupils assessed for bacterial
thresholds before treatment commenced. After audiometric tests, the ear infection were still in lower primary and the nursery school:
ENT Clinical Officer performed bilateral otoscopy and collected a in nursery section (28%) and lower primary 1–3 (33.5%).
single specimen from the eligible ear(s) with commercially prepared Majority of them were between age 13 and 14 years with
sterile fine cotton swabs from the eligible ear(s) under aseptic slightly more of males. The age and sex distribution of patients
conditions. Screw-tightened collection bottles containing Robertson are presented in Fig. 2.
Cooked Meat (RCM) medium were doubly used as transport medium Of the 9100 pupils screened, 300 had suppurative middle ear
and to facilitate multiplication of the organisms present. The screw discharge, representing a CSOM prevalence of about 3.3% in this
capped bottles were further sealed with ‘parafilm’ to ensure they population. A total of 261 samples were successfully cultured out
were airtight. At the end of each field visit – on average 6 h post of which 84 sensitivities were completed (being a sample from the
collection – we transported the specimen in cooler boxes, without total isolates considered for bacterial susceptibility tests due to
icepacks, to the nearby provincial hospital laboratory, located within lack of sensitivity discs. The samples were selected sequentially
the main town centre. The cooler boxes were used to protect the from each batch that had pure and mixed cultures, taking from the
specimen from ultraviolet rays due to direct exposure to sunlight in first available one in each case). No growth was obtained from 12
the prevailing hot environment. The microbiologist at the provincial (4.6%) of the cultures. There were 336 isolates identified, all of
hospital laboratory incubated all received specimen for 48 h before them aerobes with no anaerobes obtained, except for one case
shipping them to the University of Nairobi Laboratory for culture and
sensitivity analysis.
Processing of the specimen for culture was done for both
aerobic and anaerobic bacteria, according to the standard
operating protocols for the University of Nairobi/Kenyatta Hospital
Laboratory. Specimens were inoculated onto two blood agar plates
as follows: (i) 1 blood agar plus MacConkey agar for aerobic
incubation and (ii) 1 blood agar plate containing a Metronidazole
disc for anaerobic incubation. The plates were incubated at 37 8C.
Anaerobic incubation was done using the GasPak jar methods and
was read after 48–72 h, while aerobic cultures were read within
18–24 h. Any growths obtained from the anaerobic cultures were
further sub-cultured onto fresh blood agar and MacConkey agar
and incubated aerobically to rule out presence of facultative
aerobes. All clinically and epidemiologically important bacteria
were identified from positive cultures by their colonial morpholo-
gy on the respective media and Gram-staining reaction and further
Fig. 2. Age–sex distribution of pupils with CSOM from whom ear swabs were taken
confirmed by the pattern of reaction using standard biochemical for culture and sensitivity (N = 261). Error bars with standard error.
test methods using [15]. Negative cultures were also reported.
Sensitivity tests based on the disc diffusion methods [16] were Table 1
conducted using commercially available kits. The following Types of pathogens isolated and prevalence in the isolates.
antibiotics were tested using standard laboratory procedures:
Pathogen N = 348 Total (%)
sulphamethoxazole, gentamicin, chloramphenical, ciprofloxacin,
ceftazidime, amikacin, augmentin, doxycycline, ampicilin, linco- (%) – in single (%) – in mixed
isolates isolates
mycin, polymixin B, cephalothin, suprapen and framicetin. These
drugs are widely used in both the out-patient and in-patient units 1. Proteus 67 19.25% 43 12.4% 31.7
2. Enterococcus spp. 40 11.49% 56 16.1% 27.6
in Kenya. Inhibition zones in each case were compared against that
3. S. aureus 27 7.8% 16 4.6% 12.4
of the control organisms. The results were reported on the 4. Pseudomonas spp. 20 5.7% 18 5.2% 10.9
laboratory request forms for each respective organism as either 5. E. coli 10 2.9% 15 4.3% 7.2
‘sensitive’ or resistant. 6. Klebsiella spp. 2 0.6% 10 2.9% 3.5
7. Anthracoides 1 0.3% 9 2.6% 2.9
8. Diptheroides 1 0.3% 1 0.3% 0.6
2.5. Regulatory approval 9. Clostridium tetani 1 1 0.3 0.3
Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
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Table 2
Distribution analysis of bacterial susceptibility to selected antibiotics.
Antibiotic Sensitivity Proteus spp. Enterococcus S. aureus Pseudomonas spp. E. coli Klebsiella spp.
N (%) N (%) N (%) N (%) N (%) N (%)
Polymixin B Sensitive 0 0 0 0 0 0
Resistance 4 (100) 0 1 0 2 (100) 0
Cephalothin Sensitive 0 1 0 0 0 0
Resistance 0 0 0 0 0 0
of Clostridium tetani. Table 1 shows the frequency distribution of the lookout for symptoms as persistent otorrhoea is a high risk
the isolates. The commonest bacteria found were Proteus spp. factor for occurrence of otogenic tetani [19,20]. Children from low
(31.7%), Enterococcus (27.6%), S. aureus (12.4%) and Pseudomonas socio-economic regions may be more susceptible [19,20].
spp. (10.9%). Of the isolates recovered, only 84 (half of each from In this study cohort no related complications of CSOM were
pure and mixed bacterial isolations) were sampled for sensitivity observed, although in majority of the cases, presence of bacteria
analyses. The drugs tested were: sulphamethoxazole, gentamicin, was demonstrated. This is similar to other studies [8] and which
chloramphenical, ciprofloxacin, ceftazidime, amikacin, augmentin indicates the overwhelming importance of bacterial activity in
(amoxiclav), doxycycline, ampicilin, lincomycin, polymixin B and CSOM. The higher prevalence of bacterial infection among children
cephalothin. On average, Proteus showed susceptibility to anti- aged 13–14 years (with similar male to female ratio) in these
biotics tested for in 81.9% of the cases, while Enterococcus was children was unexplained. The commonest bacteria identified
susceptible in 53.7% of the tests, which was the lowest across the were Proteus spp. and Enterococcus. This is similar to a study in
sensitivity tests (Table 2). Specifically, Enterococcus was only Malawi which also reported increased prevalence of Proteus and
moderately susceptible to ciprofloxacin and augmentin (amox- Enterococci [21]. However, in a study reported by Moshi et al. [22],
iclav) – the drugs of choice in this context, but largely resistant to and conducted among primary school going children in Tanzania,
lincomycin, doxicycline and sulphamethoxazole. Klebsiella, Escher- similar bacterial strains including Pseudomonas aeruginosa (51.7%),
ichia coli and Proteus were highly sensitive to all the drugs tested S. aureus (17.2%), Proteus mirabilis (13.2%), Klebsiella spp. (8.0%) and
for. E. coli (5.8%) were isolated, but with varying prevalence from the
present study. Enterococci were also not reported in this series. In a
4. Discussion retrospective review of 375 ear swab specimen from clients
attending ENT clinic in Ilorin Nigeria, with a participant age range
Understanding the bacterial patterns prevalent in the commu- of 8 months–70 years, predominant prevalence of P. aeruginosa,
nity is critical for effective planning of treatment interventions and Proteus spp. and S. aureus was reported [23]. This indicates existing
supplies. In routine ear care, pus swabs are not customarily variations in microbial prevalence within given regions which may
obtained from patients suffering from chronic suppurative otitis be due to unique epidemiological or methodological differences.
media (CSOM) in our context, unless in protracted or recurrent However, it is not clear whether period difference or seasonal
cases as well as when clinical exacerbations of CSOM or its variations contribute to the prevailing bacterial patterns. Never-
complications occur. These events are more likely to occur from theless, some studies have indicated that increasing colonization
bacterial infection, although the role of biofilms has also been by enteric bacteria is more likely with warmer temperatures [24].
adduced [17]. For example, S. aureus has been frequently observed Another factor which should be considered in relation to
in cholesteatomas, while Proteus has been implicated in extra- bacterial prevalence estimates is the subjects iron status. This is
cranial and intra-cranial complications of chronic suppurative because several of the bacteria identified are known to require iron
otitis media [18]. An isolate of C. tetani was obtained from culture for their growth. This may also relate to biofilm production which
and sensitivity. The occurrence of otogenic tetani is rarely reported can influence bacterial growth [25]. Bacterial biofilms have been
in literature [19]; however it is necessary for practitioners to be on described as a growth mode specialised for long term colonization
Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011
G Model
PEDOT-6611; No. of Pages 5
D.S.O. Aduda et al. / International Journal of Pediatric Otorhinolaryngology xxx (2013) xxx–xxx 5
Please cite this article in press as: D.S.O. Aduda, et al., Bacteriology of chronic suppurative otitis media (CSOM) in children in Garissa
district, Kenya: A point prevalence study, Int. J. Pediatr. Otorhinolaryngol. (2013), http://dx.doi.org/10.1016/j.ijporl.2013.04.011