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The BUILD button allows the user to open any mo- Literature Cited
lecular editor that allows files to be saved in .pdb, .mol, .xyz,
or Calleo .mcm format, such as ACD ChemSketch (5). An- 1. Schmidt, M. W.; Baldridge, K. K.; Boatz, J. A.; Elbert, S. T.;
other alternative is to use ISIS/Draw (6) to draw the 2D struc- Gordon, M. S.; Jensen, J. H.; Koseki, S.; Matsunaga, N.;
ture of the molecule, and then to import the structure into Nguyen, K. A.; Su, S. J.; Windus, T. L.; Dupuis, M.; Mont-
ViewerLite (7) for the 2D-to-3D conversion. gomery, J. A. J. Comput. Chem. 1993, 14, 13471363.
Once an initial structure has been built, the GAMESS 2. Bode, B. M. MacGAMESS, Ames Laboratory, Iowa State Uni-
INPUT button is used to open up a window that allows versity, Ames, IA 50011. http://www.msg.ameslab.gov/GAMESS/
the user to set many of the input parameters for a PC dist.mac.shtml (accessed Jun 2003).
GAMESS run. Many of the keyword options in PC 3. Granovsky, A. A. PC GAMESS, Moscow State University,
GAMESS can be set using the list boxes in this window. Moscow, Russia. http://www.msg.ameslab.gov/GAMESS/
The RUN button initiates a PC GAMESS calculation. pcgamess.shtml (accessed Jun 2003).
The output file can be viewed at any time using the desig- 4. Bode, B. M.; Gordon, M. S. J. Mol. Graphics Mod. 1998, 16,
nated button on the interface. When the job is completed, 133138.
the SAVE JOB button saves the output file (.out), the punch 5. ACD/ChemSketch, Advanced Chemistry Development, Inc.:
file (.dat), and .pdb and .xyz versions of the final geometry Toronto, Ontario, Canada. http://www.acdlabs.com/download/
to the designated output directory. The structure and other chemsk.html (accessed Jun 2003).
properties of the molecule, such as MOs and electrostatic 6. ISIS/Draw, MDL Information Systems, Inc.: http://
potentials, can then be viewed using a designated viewer. If www.mdli.com/ (accessed Jun 2003).
a Hessian is calculated, a simulated version of the calcu- 7. ViewerLite, Accelrys, Inc.: http://www.accelrys.com/ (accessed
lated IR spectrum can be generated. Jun 2003).