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Journal of Applied Research on Medicinal and Aromatic Plants 4 (2017) 2126

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Journal of Applied Research on Medicinal and


Aromatic Plants
journal homepage: www.elsevier.com/locate/jarmap

Micropropagation and genetic delity analysis in Amomum subulatum


Roxb.: A commercially important Himalayan plant
Sumit Purohit a , Shyamal K. Nandi a, , Shilpi Paul a , Mohd. Tariq a , Lok Man S. Palni a,b
a
G.B. Pant Institute of Himalayan Environment and Development, Kosi-Katarmal, Almora- 263 643, Uttarakhand, India
b
Graphic Era (Deemed) University, Clement Town, Dehradun 248 002, Uttarakhand, India

a r t i c l e i n f o a b s t r a c t

Article history: An efcient protocol for in vitro regeneration of a commercially important plant, Amomum subulatum
Received 4 February 2016 Roxb., was developed using small pieces of rhizome explants taken from mature plants. Murashige and
Received in revised form 4 July 2016 Skoog (MS) medium supplemented with 4.0 M 6-benzylaminopurine (BAP) and 1.0 M -naphthalene
Accepted 6 July 2016
acetic acid (NAA) resulted in maximum shoot numbers (32.6) with highest shoot length of 14.00 cm
Available online 21 July 2016
and on an average 61.4 roots and with 16.90 cm root length per explant. This could be repeated when
individually separated shoots were transferred again on the same medium. Thus, on an average, about 30
Keywords:
plantlets could be obtained per culture cycle of three weeks. Ninety percent survival was recorded at the
Amomum subulatum
Genetic delity
end of the 5 weeks of acclimatization, and cent percent survival was observed after 150 days of transfer
RAPD of acclimatized plantlets into earthen pots, containing a mixture of soil and farmyard manure (3:1, v/v)
Micropropagation when the pots were kept in the open nursery with partial shade. Random amplied polymorphic DNA
Medicinal plants (RAPD) marker analysis of ten randomly selected tissue culture raised plantlets conrmed their genetic
Himalaya delity with the mother plant. High multiplication rate associated with observed genetic stability clearly
indicates the efcacy of the present in vitro clonal propagation protocol of this important medicinal plant
of high commercial value.
2016 Elsevier GmbH. All rights reserved.

1. Introduction it is also used as preventive as well as curative agent for throat


troubles, congestion of lungs, inammation of eye lids, digestive
Large cardamom (Amomum subulatum Roxb., family: Zingiber- disorders and in the treatment of pulmonary tuberculosis (Verma
aceae, Hindi: Bari Elaichi) is a tall perennial rhizomatous herb and et al., 2010; Bisht et al., 2011).
an important cash crop cultivated between 600 and 2000 m asl. It The volatile oil present in the seeds of large cardamom is a major
is mainly used as a spice and India is the largest producer of large constituent responsible for the typical odour. The seeds contain 3%
cardamom with production of 4465 metric tons in 201314 and essential oil (Gupta et al., 1984), which is dominated by 1, 8-cineole
exported 1110 metric tons during the same year (Anon, 2015). (Bal Krishnan et al., 1984; Gurudutt et al., 1996; Bhandari et al.,
In India, it is cultivated in the states of Sikkim, West Bengal, 2013); seeds also contain of a number glycosides, namely petunidin
Arunachal Pradesh, Nagaland, Mizoram, Manipur and Uttarakhand 3, 5-diglucoside, leucocyanidin 3-o--d-glucopyranoside subu-
(Bisht et al., 2010). It is also cultivated in neighboring countries like lin, aurone glycoside, cardamomin--chalcone and alpinetin-
Nepal and Bhutan. The seed has a pleasant aromatic odour due to avanone (Shankaracharya et al., 1990). In nature the plant prop-
which it is extensively used for avoring food preparations, and has agates through seeds and rhizomes (vegetatively); however, low
also been used in Ayurvedic medicines (Sharma et al., 2000). Seeds (29%) seed germination (Bisht et al., 2010) and slower rate of vege-
are also considered as an antidote to snake and scorpion venom; tative multiplication fail to cope up with ever increasing demand of
plant propagules for expanding cultivation. One of the important
problems associated with this crop is the occurrence of viral and
fungal diseases (Sharma et al., 2009) which affect productivity and
Abbreviations: IBA, Indole-3-butyric acid; BAP, 6-benzylaminopurine; NAA, - also result in high plant mortality. In order to overcome these prob-
naphthalene acetic acid; MS, Murashige and Skoog medium; PGRs, plant growth lems, use of in vitro method of propagation is considered to offer
regulators; PCR, polymerase chain reaction; RAPD, random amplied polymorphic
an alternative approach for effective and rapid means of multipli-
DNA.
Corresponding author. cation of elite genotypes. Although in vitro regeneration protocol of
E-mail address: shyamal nandi@rediffmail.com (S.K. Nandi). A. subulatum has been reported earlier (Sajina et al., 1997), data are

http://dx.doi.org/10.1016/j.jarmap.2016.07.003
2214-7861/ 2016 Elsevier GmbH. All rights reserved.
22 S. Purohit et al. / Journal of Applied Research on Medicinal and Aromatic Plants 4 (2017) 2126

Fig. 1. In vitro regeneration of A. subulatum and establishment of plants in the soil (AF).
A: Mother plants of A. subulatum, the source of explants,
B: Rhizome explants cultured on MS medium,
C: Profuse shoot multiplication in a 3-week old culture; 1 bar = 1 cm,
D: A close view of plantlets along with roots from a 3 week old culture; 1 bar = 1 cm,
E: Acclimatization of tissue culture raised plantlets after transfer of such plantlets in to thermocole trays kept for 3 weeks in a green house,
F: Established tissue culture raised plants after transfer of acclimatized plants in clay pots.

Table 1
Effect of different PGRs on shoot multiplication, elongation and rooting in A. subulatum.

Plant growth regulators (Concentration, M) Number of shoots Shoot length (cm) Number of roots Root length (cm)

BAP NAA
0.0 0.0 3.20 0.59c 4.80 0.67d 7.0 0.72d 4.00 0.72e
2.0 0.5 4.00 0.45c 7.80 0.67bc 14.8 1.49cd 6.90 0.69d
2.0 1.0 3.20 0.59c 6.00 1.16c 14.6 3.4cd 9.40 1.23bc
3.0 0.5 6.40 0.52c 8.00 2.99bc 15.0 3.23cd 7.30 0.59cd
3.0 1.0 11.8 0.87b 8.08 0.61b 35.0 3.59b 6.80 0.86d
4.0 0.5 12.8 0.59b 4.00 0.45d 11.6 1.09cd 2.30 0.26e
4.0 1.0 32.6 2.60a 14.00 1.11a 61.4 3.36a 16.90 1.05a
5.0 1.0 4.20 0.87c 8.40 0.94bc 18.4 2.42c 11.70 0.89b

Note:- Values are mean standard error; Mean values with same letters in a column are not signicantly different (P < 0.05; DMRT). The data have been recorded on per
explant basis and recorded after 3 weeks of inoculation.

missing on the clonal delity and survival of tissue culture raised These were grown in earthen pots (20 cm height and 18 cm diame-
plants in the eld. The present study reports the development of an ter) containing potting mixture (soil and farmyard manure; 3:1,
efcient in vitro propagation protocol, using rhizome pieces with v/v) under open nursery conditions with partial sun light using
bud as explants, and assessment of genetic stability of regenerated green shade nets (Fig. 1A). After several months, the rhizomes
plants and their subsequent cent percent survival 5 month after were removed from an identied pot, washed under running tap
transfer to pots. water for 1520 min to remove adhering soil and other debris. The
mother plant was labeled and kept in the green house (80% rel-
ative humidity, 25 1 C, 18/6 h day/night, light- 50% of ambient)
2. Materials and methods for further growth and subsequent use. While initiating the exper-
iment the rhizomes (from mature plant) were washed and cleaned
2.1. Plant material and tissue culture (as mentioned above) and then immersed in water containing liq-
uid detergent (0.2% Tween-20, v/v; Hi Media, India) for 20 min, and
Plants of Amomum subulatum cv. Sawney were collected (cour- washed with sterile distilled water (x4). The explants were then
tesy Dr. K.K. Singh, Senior Scientist at Sikkim unit of GBPIHED treated with Bavistin solution (2%, w/v; a systemic fungicide; BASF,
located at Tadong near Gangtok) from Kabi area (altitude 1500 m Mumbai, India) on a shaker for 30 min, and then rinsed again with
asl; 27 15 05 N; 88 39 24.27 E) in Sikkim during July 2007, sterile distilled water (x4) in a Laminar air ow cabinet (Therma-
and these were brought to the Institute at Kosi Katarmal, dyne, India), followed by treatment with freshly prepared mercuric
Almora (altitude 1150 m asl; 29 38 22.54 N; 79 37 24.87 E).
S. Purohit et al. / Journal of Applied Research on Medicinal and Aromatic Plants 4 (2017) 2126 23

Table 2
Growth performance of tissue culture raised plants of A. subulatum 180 days after transfer in pot.

Plant number Plant height (cm) Leaf length (cm) Leaf width (cm) No. of rhizomes No. of leaf

1 60 32 4 4 10
2 58 30 6 7 10
3 47 22 8 6 9
4 64 34 8 6 9
5 43 20 4 2 8
6 42 22 5 5 9
7 56 27 4 4 9
8 45 28 4 2 8
9 32 24 5 5 8
10 41 23 5 4 8
Mother 32 24 5 4 8

Table 3
RAPD banding pattern observed in A. subulatum samples.

S. No Primer code Primer sequence Annealing No of amplied No of bands


(5 3 ) temperature Fragments

Monomorphic
Polymorphic

1 OPA 1 CAGGCCCTTC 34.0 3 3 0


2 OPA 4 AATCGGGCTG 32.0 4 4 0
3 OPA 9 GGGTAACGCC 34.0 5 5 0
4 OPA 20 CAGCACCCAC 32.0 3 1 2
5 OPJ 5 CTCCATGGGG 37.5 3 3 0
6 OPJ 8 CATACCGTGG 36.0 3 2 1
7 OPJ 11 ACTCCTGCGA 32.0 4 4 0
8 OPJ 14 CACCCGGATG 35.0 6 6 0
9 OPJ 15 TGTAGCAGGG 37.0 4 4 0
10 OPJ 16 CTGCTTAGGG 36.0 4 4 0
11 OPJ 17 ACGCCAGTTC 32.0 2 1 1
12 OPJ 18 TGGTCGCAGA 36.0 1 1 0
Total 42 38 4

chloride (0.1%, w/v; 15 min, Hi media, Mumbai, India) with contin- 2.3. Acclimatization and hardening
uous shaking. The rhizome explants were nally rinsed with sterile
distilled water (x4) to remove traces of disinfectant and detergent. After ten weeks, in vitro raised plantlets were taken out from the
The scales (leaves) from the explants were carefully removed; the culture medium, their basal portions washed thoroughly in running
explants were then excised into 2.03.0 cm pieces containing buds, tap water to remove agar and traces of medium, and then rinsed
and inoculated in 250 ml conical asks on Murashige and Skoog with distilled water. These plantlets were then treated with 0.5%
(1962) medium, without plant growth regulators (PGRs). The pH (w/v) Bavistin solution (10 min) to prevent fungal contamination,
of the medium was adjusted to 5.8 0.2 with 1 N NaOH or 1 N HCl and transferred to thermocole trays [32 cm length, 32 cm width,
prior to autoclaving (1.05 kg/cm2 , 121 C, 20 min). The culture asks and 10 cm height; 16 holes (depth 9 cm; diameter 7 cm) per tray; 1
were incubated in a room at 25 1 C in 16 h light/8 h dark photope- explant per hole] containing soil and farmyard manure (FYM; 3:1,
riod with an irradiance of 40 E m2 s1 by cool uorescent tubes v/v) and maintained in the green house. These trays required fre-
(Philips TI 40 W/54, India). quent watering using a mist sprayer. After ve weeks, the hardened
plants were transferred to earthen pots (20 cm height and 18 cm
diameter) containing soil and FYM as reported above, and shifted
in the open nursery under partial sunlight (50% shading).

2.2. Shoot regeneration and rooting formation 2.4. DNA isolation and RAPD analysis

The sprouted buds (0.51.0 cm) on rhizome explants were The analysis of genetic delity was carried out using tissue cul-
removed and following excision of the basal part (from aseptically ture raised plantlets (10 nos.) along with the mother plant. DNA
grown cultures mentioned above), were again inoculated in 250 ml was isolated following the modied procedure of Khanuja et al.
Erlenmeyer asks containing 100 ml of MS medium supplemented (1999). Leaf tissue (1 g) was powdered using liquid nitrogen and
with various concentrations of PGRs (auxin: -naphthalene acetic transferred to polypropylene tubes containing 10 ml of extraction
acid, NAA, 0.51.0 M; cytokinin: 6-benzylaminopurine, BAP, buffer. The tubes were vortexed and kept at 65 C for lysis (1 h). After
2.05.0 M, see Table 1 for details). The culture asks were placed lysis equal volume of chloroform: isoamyl alcohol (1:1, v/v) was
in the culture room (as mentioned above). Four replicates (asks) added, centrifuged (10,000 rpm, 22 C, 15 min), and the upper aque-
were used for each treatment and 3 explants were placed in each ous layer was transferred into fresh tubes. RNase was added and
ask, i.e. 12 explants/treatment. The data on responsive explants the tubes were incubated for 1 h (37 C). A mixture of chloroform:
were recorded after 3 weeks of inoculation. Most of the PGR com- isoamyl alcohol (1:1, v/v) was then added to this RNase treated
binations showed shoot formation along with root initiation, but material. This mixture was subsequently centrifuged (10,000 rpm,
maximum roots along with shoots were observed in the medium 22 C, 15 min), the supernatant retained and 0.6 vol of chilled iso-
supplemented with 4.0 M BAP and 1.0 M NAA. The length of propanol was added to precipitate the DNA. Tubes were centrifuged
shoots and roots were measured using a ruler scale. (room temperature; 8000 rpm, 10 min), the supernatant discarded
24 S. Purohit et al. / Journal of Applied Research on Medicinal and Aromatic Plants 4 (2017) 2126

and the pellet washed with 75% aq. ethanol, air-dried and nally
suspended in Tris (10 mM) EDTA (1 mM) or sterile distilled water.
The DNA was then quantied and further used for PCR. The PCR
reaction was carried out in 25-l volume containing 50 ng genomic
DNA, 0.3U Taq DNA polymerase, 1x buffer, 15 mM MgCl2 , 100 mM
dNTPs and 5 pmol of RAPD primers (OPA & OPJ kit of Operon; USA).
Amplication was carried out in a thermal cycler (Biometra Mas-
ter, Germany) using 94 C for 5 min, 94 C for 1 min, 35 C for 1 min,
72 C for 2 min for 35 cycles program. The amplied products were
analysed in 1.2% agarose gel.

2.5. Data analyses

Mean values of all data were calculated using Microsoft ofce


Excel 2007. All experiments were carried out in a completely ran-
domized block design. The mean values of results obtained under
various PGR treatments were subjected to analysis of variance
(ANOVA), and the signicance level was determined at P < 0.05
using Duncans multiple range test (DMRT) using SPSS (version 7.5).
Genetic similarity matrix was calculated using Nei and Li (1979),
and the dendrogram was constructed through SYSTAT software
using unweighted pair-group method with the arithmetic averages
(UPGMA) method.

3. Results
Fig. 2. RAPD proles of mother plant (P) along with ten tissue culture raised plants
3.1. Establishments of shoot cultures and hardening (110) using two primes OPJ 18 and OPJ 15.
Note:-A-Prole with OPJ 18; B- Prole with OPJ 15; 110- tissue culture raised
plants; P- Mother plant; M- 100 bp ladder marker.
Varied morphological responses were observed with different
PGR (auxin and cytokinin) combinations and their concentrations
on rhizome explants (Table 1; Fig. 1B). All the combinations used and hardened plantlets were subsequently transferred to large
in this study showed good response for both shoot, leaf and root earthen pots (Fig. 1F) and 100% survival was recorded after 150 days
induction after three weeks of inoculation (Fig. 1C & D). The of transfer of these hardened plants into pots. The growth perfor-
DMRT test revealed signicant (P < 0.05) variation among treat- mance of tissue culture raised plants of A. subulatum 180 days after
ments (Table 1). The response of rhizome explants on medium transfer to pot is summarized in Table 2.
devoid of any PGR (control) was moderate (average shoot length:
4.80 0.67 cm, shoot number: 3.20 0.59, average root number: 3.2. Analysis of genetic stability by RAPD
7.0 0.72 and root length: 4.00 0.72 cm). Out of various PGR com-
binations tried, MS medium supplemented with 4.0 M BAP and Ten tissue culture raised plants were randomly selected along
1.0 M NAA exhibited the overall best response (average shoot with the mother plant for the analyses of genetic delity. A total
length: 14.00 1.11 cm; shoot number: 32.6 2.60; root number: of 40 RAPD primers were used and amongst them 12 were found
61.4 3.36 and root length: 16.90 1.05 cm Table 1). The second to produce clear (Figs. 2A and B) and reproducible bands. A total
best response was obtained in medium supplemented with 3.0 M of 42 bands were observed and only 3 primers (OPA 20, OPJ 8 and
BAP and 1.0 M NAA (average shoot length: 8.08 0.61 cm; average OPJ 17; Table 3) produced polymorphic bands. These RAPD proles
shoot number: 11.8 0.87; root number: 35.0 3.59 and average were used to calculate similarity matrix (Table 4). Maximum simi-
root length: 6.80 0.86 cm; Table 1). larity was observed between T5 to T6 and T8 (97%) and minimum
Based on the best observed response about 30 plantlets could be between T8, T6, T1, T2, T3, T4 (90%); based on this similarity matrix
obtained after 3 weeks of culture, and this could be repeated with a dendrogram was constructed (Fig. 3). The dendrogram showed
similar results when individually separated shoots were planted two separate groups (Group I & II); Group I comprised of T4 plant,
again on the same medium. Thus on an average 30 plantlets could and the group II comprised of all other tissue culture raised plants
be produced per shoot per culture cycle of three weeks. (T1 to T3 , T5 to T10 ) along with the mother plant (M). Morpholog-
In this study, the combinations of BAP and NAA used were found ically T4 plant was found to be taller with longer leaves than the
to be highly suitable (Table 1) not only for shoot multiplication other plants (180 days after transfer in pots; Table 2), this could be
but also for root formation, and hence a separate constitution for a somaclonal variant and hence it formed a separate group.
root initiation was not required as is often the case. Complete and
well rooted plantlets could be produced after ten weeks of culture, 4. Discussion
and the individual plantlets (Fig. 1D) were subsequently transferred
into thermocole trays (Fig. 1E) and maintained under humid condi- The objectives of the study reported in this paper were to
tions (95100% RH) in greenhouse for the initial 10 days and then establish a reproducible and efcient in vitro propagation protocol
gradually acclimatized for another 20 days. All the regenerated and that could be used for commercial purpose. The use of auxin and
hardened plantlets (90% survival) were found to be morphologi- cytokinin combination is well known for in vitro shoot multiplica-
cally uniform and exhibited morphological characteristics similar tion as has been reported for several species, including A. subulatum.
to those of the mother plant (Fig. 1A). It is worth mentioning that In a previous study on A. subulatum (Sajina et al., 1997), when
well-developed plantlets could be obtained across all the combina- rhizome segments were cultured an MS medium supplemented
tions of BAP and NAA used in this study (Table 1). Fully developed with BAP or NAA alone or in combination of BAP + IBA (Indole-3-
S. Purohit et al. / Journal of Applied Research on Medicinal and Aromatic Plants 4 (2017) 2126 25

Table 4
Similarity matrix of mother plant and randomly selected ten tissue culture raised plants of A. subulatum.

T1 T2 T3 T4 T5 T6 T7 T8 T9 T10 Mother

T1 0.952
T2 0.929 0.929
T3 0.929 0.929 0.929
T4 0.952 0.929 0.929 0.976
T5 0.952 0.929 0.929 0.952 0.976
T6 0.929 0.929 0.929 0.929 0.952 0.952
T7 0.952 0.929 0.929 0.952 0.976 0.952 0.976
T8 0.905 0.905 0.905 0.905 0.929 0.929 0.929 0.929
T9 0.929 0.929 0.929 0.929 0.952 0.952 0.952 0.929 0.952
T10 0.929 0.929 0.929 0.929 0.952 0.952 0.952 0.929 0.952 0.952
Mother 0.929 0.929 0.929 0.929 0.952 0.952 0.952 0.929 0.952 0.952 0.952

Cluster Tree tions and reported in several plant species (Larkin and Scowcroft,
1981; Barwale and Wildholm, 1987; Kaeppler et al., 2000). The vari-
T4 ants thus obtained are useful and can be exploited further by the
T3 breeders for commercial purposes. Obviously, the risks of genetic
T2 changes induced by tissue culture and the importance of assess-
T1 ing the genetic stability of the biological material along all phases
T7 of storage and growth must be considered in the context of large
T5 scale multiplication.
T10
T6
5. Conclusions
T9
MOTHER
T8
This study appears to be the rst report of cent percent sur-
vival of tissue culture raised plants after 5 month of transfer to
0.0 0.1 0.2 0.3 pots containing soil and FYM mixtures, along with genetic delity
Distances
assessment of the regenerates. Conventionally A. subulatum is prop-
Fig. 3. Dendrogram illustrating the genetic relationship among the mother plant agated through seeds and rhizomes (vegetatively) which is slow.
and randomly selected 10 tissue culture raised plants (T1T10). Therefore, the in vitro propagation protocol developed can be very
effective method for multiplication of elite and/or high yielding
plants to cope up with ever increasing demand of plant propag-
butyric acid, as auxin), BAP + NAA or IBA + NAA produced shoots ules for expanding cultivation of this important cash crop; but it
and roots simultaneously. However, best response was obtained in needs to be tested for large scale multiplication and eld planta-
a combination of MS medium with BAP (1.0 mg/l) and IBA (0.5 mg/l) tion. Conrmation of genetic delity of micropropagated plants is
producing 812 shoots/culture and 5 roots/shoot. These workers important and necessary for the production of uniform regener-
have reported 90% survival of plants after transfer to soil (Sajina ates for use in commercial plantations. Thus this investigation has
et al., 1997). Similarly in the present investigation MS medium tremendous commercial implications as large cardamom is used
supplemented with 4.0 M BAP and 1.0 M NAA was found to be as spice worldwide, as avoring agents and for pharmaceutical
suitable for large scale multiplication. Thus MS medium supple- purposes by different industries.
mented with natural cytokinin (BAP) and synthetic auxin (NAA)
is favorable for micropropagation of A. subulatum. Earlier reports Conicts of interest
on micropropagation of other Zingiberaceous plants like small car-
damom, ginger and turmeric indicated similar results (Hosoki and The authors declare no conicts of interest, nancial or other-
Sagawa, 1977; Nadgauda et al., 1978, 1983; Pillai and Kumar, 1982; wise.
Kumar et al., 1985; Ilahi and Jabeen, 1987; Bhagyalakshmi and
Singh, 1988; Nirmal Babu et al., 1992; Salvi et al., 2002). Acknowledgements
Micropropagation and genetic delity assessment has been
reported using rhizome, nodal and leaf explants in several other The authors thank Director, G.B. Pant Institute of Himalayan
species (Agnihotri et al., 2009; Purohit et al., 2015; Mukhopadhyay Environment and Development, Kosi-Katarmal, Almora for facili-
et al., 2016). In general, the use of rhizome explants ensures clonal ties and encouragement; Dr. K.K. Singh, Senior Scientist at Sikkim
propagation of true-to-type plants. RAPD markers have been used unit of GBPIHED, Tadong, near Gangtok, Sikkim is thanked for pro-
successfully to assess the genetic stability among species belonging viding the plant material. All colleagues of the Group are thanked
to Zingiberaceae (Rout et al., 1998; Islam et al., 2004; Wondyifraw for cooperation and help. Financial support in the form of an Insti-
and Wannakrairoj, 2004; Mohanty et al., 2011). In recent years, tute project (no. 19) is duly acknowledged.
systematic sampling of germplasm and analysis of their molecu-
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