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Midterm 2 Exam
Name:________________________________________________
Student ID Number:_____________________________________
Student email:__________________________________________
Section TA Name:_______________________________________
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exam paper.
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Make sure you follow the directions given. If you are asked to circle the correct response, you
Please make sure that your answers are brief, specific, and limited to the lines provided. If
incorrect information is included in your answer, you can lose points even if the correct
information is also there. Answers outside of boxes or lines will NOT be read.
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messaging!
At the conclusion of this exam, please sign the honor code statement on the last page.
Q 1. ___________/3
Q 2. ___________/6
Q 3.___________/12
Q 4. ___________/7
Q 5. ___________ /8
Q 6. ___________/5
Q 7. ___________ /14
Q 8. ___________ /4
Q 9. ___________/6
Q 10. __________/8
Q 11. __________/3
Q 12. __________/4
Q 13. __________/4
Q 14. __________/10
Q 15. __________/6
Total __________/100
Question 1 (3 points)
Lisa tries to determine cell fate of cells from various parts of the blastula of the frog.
a) (1 pt) At the end of gastrulation, what tissue layer will form from cells that originated from the top of the
animal pole of the blastula? ___________________________________________
b) (1 pt) At the end of gastrulation, what tissue layer will form from cells that originated from the bottom of the
vegetal pole of the blastula? ___________________________________________
c) (1 pt) Cells in which area of the blastula will eventually differentiate into blood cells? Be specific.
___________________________________________________________________________________
Question 2 (6 points)
We studied two cloning experiments in class: the creation of a frog from an intestinal nucleus (in the 1960s)
and the creation of Dolly the sheep (in the 1990s).
a) (2 pts) What is the name of the common technique/procedure used in both experiments? Briefly describe the
technique. Be sure to mention the important features of the cell types and components used in both experiments.
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c) (2 pts) What fundamental principles in developmental biology do these cloning experiments tell us about the
somatic cell nucleus? _______________________________________________________________________
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In normal embryos, the even skipped promoter has binding sites for hunchback, bicoid, giant, and
krppel. Expression of even-skipped in stripe 2 is due to activation by hunchback and bicoid and repression by
giant and krppel. The expression pattern of these proteins with regard to the AP axis can be seen in the
diagram below.
expression levels
anterior
posterior
You generate 3 Drosophila mutants. In each mutant, the binding sites for one of the transcription factors has
been deleted from the even-skipped promoter region as follows:
Mutant 1: Binding sites for Giant have been eliminated Even-skipped expression pattern
b) (4 pt) The above experiments suggest that even-skipped expression is not simply due to the presence of the 2
activators and absence of the 2 repressors. Propose ONE plausible hypothesis as to why there is no expression
of even-skipped in the far-most anterior pole of the mutant in D of the previous figure.
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d) (2 pts) Besides even-skipped itself, the expression of what other broad category of developmental genes will
be affected in these three mutants?
a) Responds to all types of pathogens (i.e., viruses, bacteria, parasites, and fungi).
e) Provides protective responses during the first few days after the initial infection with a pathogen.
ii) Give one example of a tissue that would have decreased protection against pathogens:
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iii) Briefly describe how IgA is uniquely able to function at this site:
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ii) Briefly describe how IgG uniquely functions in this role: __________________________________________
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ii) Based on what you know about IgE functions, briefly propose a mechanism by which IgE might mediate this
protection: _____________________________________________________________________________
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1) ________________________________________________________________________________________
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2) ________________________________________________________________________________________
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3) ________________________________________________________________________________________
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b) (2 pts) List two (2) ways in which these proteins are different in their genetics, structure, and/or function.
(note: one difference should be related to antigen recognition).
1) ________________________________________________________________________________________
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2) ________________________________________________________________________________________
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a) (2 pts each; 6 pts total) For each of the following components of immune responses, briefly describe an
experiment you could do (with BLAB mice that had not previously been exposed to Mobola virus plus BLAB
mice that had recovered from infection, and using the kinds of techniques covered in class), that would test the
hypothesis that this component contributes to protection against the virus, that enables the mice to recover.
i) Antibodies:______________________________________________________________________________
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__________________________________________________________________________________________
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b) (6 pts) True/False. The following statements describe possible steps leading to the generation of anti-
Mobola virus antibodies in mice that recover from the infection. Indicate whether a statement is true or false by
circling True or False. Note: Evaluate each statement independently. The statements do not have to be in
correct order relative to each other. Also, the generation of memory cells is occurring along with plasma cells,
but memory cells are not mentioned to simplify the statements.
i) Virus binds to the B-cell receptor on nave B cells in lymph nodes and activates them to proliferate and
differentiate into antibody-secreting plasma cells making anti-Mobola antibodies.
True False
ii) Effector TH cells recognize viral peptide:MHC class II complexes on B cells and stimulate them to proliferate
and differentiate into antibody-secreting plasma cells making anti-Mobola antibodies.
True False
iii) B cells in the lungs bind Mobola virus and carry it through lymphatic vessels to draining lymph nodes, where
the B cells become activated by the virus and by TH cells to differentiate into plasma cells making anti-Mobola
virus antibodies.
True False
iv) In lymph nodes, nave TH cells recognize viral peptides bound to MHC class I proteins on macrophages or
dendritic cells and are activated to proliferate and differentiate into effector TH cells that can help activate B
cells.
True False
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v) Virus binding to the B-cell receptor on nave B cells in lymph nodes partially activates them, and triggers
receptor-mediated endocytosis, viral degradation in endosomes/lysosomes, and the loading of viral peptides on
MHC class II proteins.
True False
vi) Free Mobola virus particles and virus carried by dendritic cells travel through lymphatic vessels to lymph
nodes where Mobola virus can be internalized and degraded by macrophages and dendritic cells into peptides
that bind to MHC class II proteins and activate nave TH cells.
True False
c) (2 pts) Boris, a freshman who has not taken Bio42, asks the fundamental question of how antibodies help to
rid the mice of Mobola virus infection. For simplicity, you decide to describe just the mechanism of protection
that can be mediated by antibodies of any heavy chain class. What is that mechanism and how does it work to
end the viral infection?
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Question 8 (4 points)
You are studying LTP in the hippocampus of a rat. For each of the following, circle whether the action would
increase the strength of LTP, decrease LTP, or have no effect. (1 pt. each, 4 pts total)
a) You overexpress the gene for nitric oxide synthase in the hippocampus.
b) You overexpress a protease inhibitor that is specific to dendritic spines in the hippocampus.
c) The rat has just eaten a large meal resulting in high concentrations of neuronal ATP.
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Question 9 (6 points)
Experiment 1
The diagram above shows a synapse in a region of the brain where LTP could occur. When the presynaptic
terminal is stimulated, it releases a LOT of glutamate into the synapse. However, even with repeated stimulation
of the presynaptic terminal over a long period of time, you see no change in membrane voltage in the post-
synaptic spine (Experiment 1 above).
Next you stimulate the presynaptic terminal repeatedly as before, but at the same time, you also electrically
stimulate the post-synaptic spine directly (see Experiment 2 below).
Experiment 2
Stimulate Stimulate
Several days after Experiment 2, you stimulate just the presynaptic terminal, without stimulating the post-
synaptic spine. This time, you see significant post-synaptic membrane depolarization.
a) (2 pts) What relevant type of receptors were already present on the post synaptic spine prior to Experiment 2?
______________________________________________________________
b) (2 pts) What were the immediate consequences of electrical stimulation of the post-synaptic spine in
experiment 2?
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c) (2 pts) In experiment 1, repeated stimulation of the presynaptic neuron did not result in any post-synaptic
membrane depolarization. After experiment 2, what is the ONE most important long-term change that has
occurred in the post-synaptic neuron, which allows presynaptic neuronal stimulation to trigger post-synaptic
membrane depolarization? Explain briefly. _______________________________________________________
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Question 10 (8 points)
(2 pts) Part 1. Theres no free lunch part 1.
Numerous neurotransmitter biosynthetic pathways are efficient in that two different neurotransmitters are made
from the same precursor. Which downside of this efficiency was discussed in class? Circle the ONE BEST
choice.
A. Loss of function mutations in the rate-limiting enzyme impairs the synthesis of two
neurotransmitters.
B. Hallucinogens (i.e., drugs that can mimic the action of a neurotransmitter because of their close
structural resemblance) are particularly potent, because they can mimic two neurotransmitters.
C. If there is an excess of precursor, there will be shortages of both neurotransmitters.
D. The receptors for the two neurotransmitters have to be particularly sensitive, in order to
distinguish between the neurotransmitters which, despite being structurally similar, are not
necessarily functionally similar.
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Question 11 (3 points)
The nervous system evolved to maximize contrasts. That helps explain which of the following? Circle ALL
that apply:
A. In the absence of excitation, theres charge separation across the neuronal membrane.
B. The resting potential evolved to be negatively, rather than positively charged.
C. That chloride channels open at the peak of the action potential.
D. That potassium channels open at the trough of the refractory period.
E. Spatial sharpening of neuronal signaling, brought about by neurons sending inhibitory
collatoral projections back onto themselves.
F. Temporal sharpening of neuronal signaling, brought about by lateral inhibition of parallel
circuits.
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Question 12 (4 points)
(2 pts) Part 1.
The activation of the visual cortex in blind individuals when they read Braille is due to: (Circle the ONE BEST
choice)
A. Birth of new neurons in the (adult) visual cortex.
B. The fact that, as Braille is learned, synapses connecting tactile neurons in fingertips with
neurons in the visual cortex undergo LTP.
C. The fact that, as Braille is learned, tactile neurons in fingertips remap to include the visual
cortex as targets for their projections.
D. The migration of retinal photoreceptors to fingertips.
(2 pts) Part 2.
A
B
Above is a diagram of a three neuron circuit in which Neuron A sends an excitatory projection onto Neuron B,
and Neuron C sends an inhibitory GABA-ergic axo-axonic projection onto Neuron A. Thanks to a mutation,
when GABA binds to its receptor in this circuit, sodium channels open. As a result: (Circle the ONE BEST
choice)
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Question 13 (4 points)
For each statement below, assume that apart from the defect mentioned, all other aspects of neuronal function
are normal.
(2 pts) Part 1. In a neuron, which of the following will increase the contrast between the excited state and the
silent state? Circle ALL that apply:
A. Maximum permeability to potassium occured at +50 mV instead of +30mV.
B. The first voltage-gated sodium channels in the axon hillock opened at 65 mV instead of 40
mV.
C. Potassium channels closed at 80 mV instead of 90 mV.
D. The resting potential was 80 mV instead of 70 mV.
(2 pts) Part 2. In a neural circuit, which of the following will increase the contrast between the excited state
and the silent state? Circle ALL that apply:
A. Decreasing the amount of neurotransmitter released by inhibitory collaterals that mediate self
inhibition of neurons.
B. Increasing the amount of neurotransmitter released by inhibitory collaterals that mediate lateral
inhibition.
C. Flattening dendritic spines in neurons throughout the circuit.
D. Allowing each neuron in the circuit to form synapses with every other neuron in the circuit.
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1
Pain
traveling
up
spine
2
For each of the following i-v, write the one correct consequence from the list of possible consequences A-E
below. Note: Each letter choice (A-E) should be used once.
i) ______ A drug is administered which blocks the reuptake of the neurotransmitter released by
Neuron 1.
ii) ______C fiber activation causes excitation, rather than inhibition of Neuron 1.
iii) ______C fibers became myelinated.
iv) ______A fibers became unmyelinated.
v) ______The axon of Neuron 2 has sprouted collaterals that axo-axonically inhibit A fibers
projecting onto Neurons 1 and 2. Neuron 2 continues to signal up the spine as usual.
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Question 15 (6 points)
Consider the following neurotransmitter/receptor/ion channel relations:
Receptor A is coupled to a sodium channel.
Receptor B is coupled to a chloride channel.
Neurotransmitter 1 has a high binding affinity for Receptor A and a weak binding affinity for Receptor B.
Neurotransmitter 2 has a high binding affinity to Receptor B and does not bind Receptor A at all.
In all cases, once the neurotransmitter binds the receptor, the channel will open.
You now begin to look at the effect of each neurotransmitter on neurons expressing one or both types of
receptors on their surface to see how excitable the neuron is (i.e., how likely the neuron is to have an action
potential). See table below.
INSTRUCTIONS: Based on the neuronal receptors that are on the surface, circle how the neuron will respond
to each neurotransmitter applied to the synapse. NOTE: For each cell in the table, circle ONE response.
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Honor Code Statement:
I have followed the Stanford Honor Code while taking this exam.
Signature:_____________________________________
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Neurobiology
Term
List:
Nervous
System
and
Neuronal
Anatomy
Ion
Channels,
membrane
potentials,
electrical
flow
of
information
VNS
(Voluntary
Nervous
System)
Receptor-Gated
Ion
Channel
ANS
(Autonomic
Nervous
System)
Voltage-Gated
Ion
Channels
SNS
(Sympathetic
Nervous
System)
Resting
Membrane
Potential
PNS
(Parasympathetic
Nervous
System)
Nernst
Equation
Hypothalamus
Goldman
Equation
Cortex
Saltatory
conduction
Limbic
System
Depolarization,
Hyperpolarization,
Anterior
Pituitary
Repolarization
Posterior
Pituitary
Refractory
period
Neuron
Resting
Potential
Soma
Action
Potential
Dendrite
Temporal
summation
Axon
Hillock
Spatial
summation
Axon
Delayed
rectification
Myelin
Sheath
Nodes
of
Ranvier
Synapse
Neural
Networks
LTP
(Long
Term
Potentiation)
Lateral
geniculate
NMDA
receptors
Stellate
cells
Non-NMDA
receptors
Fast
Pain
Fiber
Calcium
Slow
Pain
Fiber
Magnesium
Temporal
sharpening
Sodium
Spatial
sharpening
Nitric
Oxide
Lateral
Inhibition
Carbon
Monoxide
Collateral
Arachidonic
Acid
Feedforward
Inhibition
Ethanol
Interneuron
Adenosine
Axo-axonic
communication
ATP
Intestinal
peristalsis
Contrast
enhancement
Center/surround
Neurotransmitters
and
hormones
Glutamate
GABA
Dopamine
L-DOPA
Acetylcholine
Serotonin
Norepinephrin
Ephinephrin
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