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Introduction
Laboratory for Molecular Genetics, Institute for Medical Research, bClinic for
Dermatovenereology, cCenter for Biochemistry, dClinic for Plastic Surgery and
Burns, Military Medical Academy, eFaculty of Medicine, Military Medical Academy,
University of Defense and fDepartment of Genetics and Evolution, Faculty of
Biology, University of Belgrade, Belgrade, Serbia
Correspondence to Katarina Zeljic, PhD, Laboratory for Molecular Genetics,
Institute for Medical Research, Military Medical Academy, Crnotravska 17,
11 000 Belgrade, Serbia
Tel: + 381 63 84 52 350; fax: + 381 11 266 27 22;
e-mails: katjaze@yahoo.com, katarina.zeljic@bio.bg.ac.rs
*Katarina Zeljic and Lidija Kandolf-Sekulovic contributed equally to the writing of
this article.
Received 30 December 2013 Accepted 11 February 2014
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Results
Association between vitamin D receptor single
nucleotide polymorphisms, melanoma risk, and
clinicopathological characteristics
Genotype and allele distribution of vitamin D receptor gene polymorphisms in melanoma patients and the control group
Genes/SNPs
EcoRV/rs4516035
FokI/rs2228570
ApaI/rs7975232
TaqI/rs731236
Genotype
Cases (N)
Controls (N)
Allele
Cases (N)
Controls (N)
ee
Ee
EE
ff
Ff
FF
aa
Aa
AA
TT
Tt
tt
27
66
24
17
60
40
21
41
55
33
62
22
34
51
37
46
62
14
29
41
52
59
48
15
0.067
e
E
120
114
119
125
0.583
< 0.0001
f
F
94
140
154
90
< 0.0001
0.533
a
A
83
151
99
145
0.251
0.006
T
t
128
106
166
78
0.003
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Table 2
Genes/SNPs
EcoRV/rs4516035
FokI/rs2228570
ApaI/rs7975232
TaqI/rs731236
Genotype
Cases [N (%)]
Controls [N (%)]
ee
Ee
EE
Dominantb
Recessivec
Log-additive
ff
Ff
FF
Dominantb
Recessivec
Log-additive
aa
Aa
AA
Dominantb
Recessivec
Log-additive
TT
Tt
tt
Dominantb
Recessivec
Log-additive
27 (23)
66 (56)
24 (21)
90 (77)
93 (79)
17 (15)
60 (51)
40 (34)
100 (85)
77 (66)
21 (18)
41 (35)
55 (47)
96 (82)
62 (53)
33 (28)
62 (53)
22 (19)
84 (72)
95 (81)
34 (28)
51 (42)
37 (30)
88 (72)
85 (70)
46 (38)
62 (51)
14 (11)
76 (62)
108 (89)
29 (24)
41 (34)
52 (43)
93 (76)
70 (57)
59 (48)
48 (39)
15 (13)
63 (52)
107 (88)
(0.8943.409)
(0.4332.524)
(0.7672.793)
(0.3441.245)
(0.6901.500)
(1.3975.855)
(3.49623.339)
(1.9838.128)
(1.9298.237)
(1.8504.590)
(0.7143.464)
(0.9654.650)
(0.9163.813)
(0.8712.714)
(0.4901.020)
(1.2194.427)
(1.5028.428)
(1.4334.775)
(1.0644.493)
(1.3002.970)
P
Reference
0.103
0.899
0.248
0.196
0.930
Reference
0.004
< 0.0001
< 0.0001
< 0.0001
< 0.0001
Reference
0.261
0.061
0.086
0.138
0.061
Reference
0.010
0.004
0.002
0.034
0.001
CI, confidence interval; N, total number of cases/controls; SNP, single nucleotide polymorphism; OR, odds ratio.
Adjusted for sex and age.
Heterozygous and mutated genotypes combined versus the wild-type genotype.
c
Mutated genotype versus heterozygous and the wild-type genotype combined.
P < 0.05 is shown in bold.
a
HR
Lower
Upper
0.699
0.973
0.241
1.175
1.206
2.655
2.673
2.607
0.781
0.827
1.970
0.871
0.156
0.927
0.054
0.283
1.029
1.024
1.335
1.058
0.257
0.277
0.596
0.288
3.125
1.022
1.077
4.879
1.414
6.884
5.353
6.427
2.373
2.475
6.513
2.630
0.639
0.281
0.062
0.825
0.021
0.045
0.006
0.037
0.662
0.735
0.266
0.806
Discussion
Ultraviolet radiation plays an important role in melanomagenesis and, at the same time, it is necessary for the
skin vitamin D synthesis, the main source of vitamin D in
humans. The UVR action spectrum is almost the same for
direct DNA damage and vitamin D synthesis it belongs
to the UVB spectrum. Hence, there is a complex
relationship between UVR exposure, vitamin D levels,
VDR polymorphisms, and development of melanoma.
This could explain the variable association of these
factors in different populations from different latitudes,
and so far, these have been reported for the UK, Spain,
USA, and Denmark. In this study, we have explored these
associations, particularly VDR polymorphisms and vitamin
D levels, in samples in Serbia, representing the population of southeast Europe.
In our study, significant differences in both genotype
distribution and allele frequency of FokI and TaqI
VDR gene polymorphisms between the cases and control
groups indicate their potential role in melanoma susceptibility. The results of the current study indicate that
heterozygous and mutated genotypes, as well as the
variant allele carriers of FokI polymorphisms, could be
associated with an increased risk of melanoma in
comparison with the wild-type genotype. Thus, it could
be assumed that wild-type FokI could play a protective
role in melanoma susceptibility. Our findings are in
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Fig. 1
18
8
9
78
Block 1 (0 kb)
3
4
2
0
0
18
1
rs731236
rs7975232
rs2228570
Block 1 (0 kb)
3
4
rs4516035
rs731236
rs2228570
rs7975232
rs4516035
(a)
24
2
16
16
1
59
Block 1 (0 kb)
3
4
2
12
5
rs731236
rs7975232
rs2228570
Block 1 (0 kb)
3
4
rs4516035
rs731236
rs2228570
rs7975232
rs4516035
(b)
17
0
11
19
15
rs731236
rs7975232
1
0
12
8
rs2228570
Block 1 (0 kb)
3
4
rs4516035
rs731236
rs2228570
rs7975232
rs4516035
(c)
Block 1 (0 kb)
3
4
1
32
1
Pairwise linkage disequilibrium plots of analyzed polymorphisms in the vitamin D receptor gene for (a) cases and the control group taken together,
(b) cases group, (c) control group. D0 and r2 values are presented in percentages. The red-shaded boxes correspond to the paired D0 values between
the single nucleotide polymorphisms (SNPs). Shades of pink: LOD > 2, D0 > 1; red: LOD > 2, D0 = 1; white: LOD < 2, D0 < 1. The gray-shaded boxes
correspond to the paired r2 between the SNPs. White: r2 = 0; shades of gray: 0 < r2 < 1; black: r2 = 1. LOD, logarithm of odds.
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Table 4 Haplotype frequencies and haplotype odds ratio analysis for vitamin D receptor gene polymorphisms, compared with the most
common haplotype
N (%)
Haplotypes
At
aT
AT
at
Total
85
84
63
7
(36)
(35)
(26)
(3)
Association P value
Cases
Controls
46
35
29
7
39
50
34
0
(39)
(29)
(25)
(6)
(32)
(40)
(28)
(0)
Raw
Permutation
0.040
0.030
0.336
0.003
0.210
0.095
0.769
0.003
Reference
1.781 (1.1762.698)
1.594 (0.9962.551)
0.362 (0.00344.178)
0.006
0.052
0.678
N, total number of cases/controls; HOR, haplotype odds ratio; CI, confidence interval.
P < 0.05 is shown in bold.
Studies on the association between VDR gene polymorphisms and the risk of melanoma are not consistent in
the literature. These discrepancies may be because of
differences in serum vitamin D levels, sun exposure,
population differences, and sample size [3]. A study
carried out in a Danish population showed that elevated
plasma calcidiol level was associated with an increased
risk of nonmelanoma and melanoma cancer [14]. In
contrast, higher vitamin D serum levels were associated
with lower Breslow thickness and better survival of
melanoma patients in a UK study [12]. In the first study
from a country with high insolation (Spain), suboptimal
vitamin D levels were also found in melanoma patients at
diagnosis, but the levels were higher than those reported
in the UK study. In our study, the vitamin D levels in
winter months were from 20 to 75 nmol/l in 68.6% of
patients and less than 20 nmol/l in 31.4% of patients
(median age 48.5 years). Low vitamin D levels were also
found in postmenopausal women in this region in 88.4%
of patients [32]. Apart from the possible insufficient sun
exposure, these data also indicate a probable insufficient
vitamin D intake in our population, and this was
reported previously for the region of central and eastern
Europe [33], possibly linked to socioeconomic factors,
compared with western European countries [33]. This
further emphasizes the necessity of identifying melanoma
patients with suboptimal vitamin D levels, and advising
them on vitamin D supplementation as after the
diagnosis of melanoma, rigorous sun protection is advised,
and therefore, vitamin D status could deteriorate further.
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15
16
17
18
19
20
21
Acknowledgements
Conflicts of interest
22
References
1
4
5
6
7
8
9
10
11
12
13
14
De Souza CF, Xander P, Monteiro AC, Silva AG, da Silva DC, Mai S, et al.
Mining gene expression signature for the detection of pre-malignant
melanocytes and early melanomas with risk for metastasis. PLoS One 2012;
7:e44800.
Gapska P, Scott RJ, Serrano-Fernandez P, Mirecka A, Rassoud I, Gorski B,
et al. Vitamin D receptor variants and the malignant melanoma risk: a
population-based study. Cancer Epidemiol 2009; 33:103107.
Li C, Liu Z, Zhang Z, Strom SS, Gershenwald JE, Prieto VG, et al. Genetic
variants of the vitamin D receptor gene alter risk of cutaneous melanoma.
J Invest Dermatol 2007; 127:276280.
Tsao H, Chin L, Garraway LA, Fisher DE. Melanoma: from mutations to
medicine. Genes Dev 2012; 26:11311155.
Rastrelli M, Alaibac M, Stramare R, Chiarion Sileni V, Montesco MC,
Vecchiato A, et al. Melanoma m (zero): diagnosis and therapy. ISRN
Dermatol 2013; 2013:616170.
Regad T. Molecular and cellular pathogenesis of melanoma initiation and
progression. Cell Mol Life Sci 2013; 70:40554065.
Bis S, Tsao H. Melanoma genetics: the other side. Clin Dermatol 2013;
31:148155.
Deeb KK, Trump DL, Johnson CS. Vitamin D signalling pathways in cancer:
potential for anticancer therapeutics. Nat Rev Cancer 2007; 7:684700.
Field S, Newton-Bishop JA. Melanoma and vitamin D. Mol Oncol 2011;
5:197214.
Osborne JE, Hutchinson PE. Vitamin D and systemic cancer: is this relevant
to malignant melanoma? Br J Dermatol 2002; 147:197213.
Gandini S, Francesco F, Johanson H, Bonanni B, Testori A. Why vitamin D
for cancer patients? Ecancermedicalscience 2009; 3:160.
Newton-Bishop JA, Beswick S, Randerson-Moor J, Chang YM, Affleck P,
Elliott F, et al. Serum 25-hydroxyvitamin D3 levels are associated with
Breslow thickness at presentation and survival from melanoma. J Clin Oncol
2009; 27:54395444.
Ogbah Z, Visa L, Badenas C, Rios J, Puig-Butille JA, Bonifaci N, et al. Serum
25-hydroxyvitamin D3 levels and vitamin D receptor variants in melanoma
patients from the Mediterranean area of Barcelona: 25-hydroxyvitamin D3
levels and VDR variants in melanoma patients from Barcelona. BMC Med
Genet 2013; 14:26.
Afzal S, Nordestgaard BG, Bojesen SE. Plasma 25-hydroxyvitamin D and
risk of non-melanoma and melanoma skin cancer: a prospective
cohort study. J Invest Dermatol 2013; 133:629636.
24
25
26
27
28
29
30
31
32
33
Uitterlinden AG, Fang Y, Van Meurs JB, Pols HA, Van Leeuwen JP.
Genetics and biology of vitamin D receptor polymorphisms. Gene 2004;
338:143156.
Whitfield GK, Remus LS, Jurutka PW, Zitzer H, Oza AK, Dang HT, et al.
Functionally relevant polymorphisms in the human nuclear vitamin D
receptor gene. Mol Cell Endocrinol 2001; 177:145159.
Mishra DK, Wu Y, Sarkissyan M, Sarkissyan S, Chen Z, Shang X, et al.
Vitamin D receptor gene polymorphisms and prognosis of breast
cancer among African-American and Hispanic women. PLoS One 2013;
8:e57967.
Kupfer SS, Anderson JR, Ludvik AE, Hooker S, Skol A, Kittles RA, et al.
Genetic associations in the vitamin D receptor and colorectal
cancer in African Americans and Caucasians. PLoS One 2011;
6:e26123.
Zeljic K, Supic G, Stamenkovic Radak M, Jovic N, Kozomara R, Magic Z.
Vitamin D receptor, CYP27B1 and CYP24A1 genes polymorphisms
association with oral cancer risk and survival. J Oral Pathol Med 2012;
41:779787.
Santonocito C, Capizzi R, Concolino P, Lavieri MM, Paradisi A, Gentileschi S,
et al. Association between cutaneous melanoma, Breslow thickness and vitamin
D receptor BsmI polymorphism. Br J Dermatol 2007; 156:277282.
Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of
LD and haplotype maps. Bioinformatics 2005; 21:263265.
Tregouet DA, Garelle V. A new JAVA interface implementation of THESIAS:
testing haplotype effects in association studies. Bioinformatics 2007;
23:10381039.
Hutchinson PE, Osborne JE, Lear JT, Smith AG, Bowers PW, Morris PN,
et al. Vitamin D receptor polymorphisms are associated with altered
prognosis in patients with malignant melanoma. Clin Cancer Res 2000;
6:498504.
Mocellin S, Nitti D. Vitamin D receptor polymorphisms and the risk of
cutaneous melanoma: a systematic review and meta-analysis. Cancer 2008;
113:23982407.
Randerson-Moor JA, Taylor JC, Elliott F, Chang YM, Beswick S, Kukalizch K,
et al. Vitamin D receptor gene polymorphisms, serum 25-hydroxyvitamin D
levels, and melanoma: UK casecontrol comparisons and a meta-analysis of
published VDR data. Eur J Cancer 2009; 45:32713281.
Li C, Liu Z, Wang LE, Gershenwald JE, Lee JE, Prieto VG, et al. Haplotype
and genotypes of the VDR gene and cutaneous melanoma risk in nonHispanic whites in Texas: a casecontrol study. Int J Cancer 2008;
122:20772084.
Lesiak A, Norval M, Wodz-Naskiewicz K, Pawliczak R, Rogowski-Tylman M,
Sysa-Jedrzejowska A, et al. An enhanced risk of basal cell carcinoma is
associated with particular polymorphisms in the VDR and MTHFR genes.
Exp Dermatol 2011; 20:800804.
Schafer A, Emmert S, Kruppa J, Schubert S, Tzvetkov M, Mossner R, et al.
No association of vitamin D metabolism-related polymorphisms and
melanoma risk as well as melanoma prognosis: a casecontrol study. Arch
Dermatol Res 2012; 304:353361.
Barroso E, Fernandez LP, Milne RL, Pita G, Sendagorta E, Floristan U, et al.
Genetic analysis of the vitamin D receptor gene in two epithelial cancers:
melanoma and breast cancer casecontrol studies. BMC Cancer 2008;
8:385.
Povey JE, Darakhshan F, Robertson K, Bisset Y, Mekky M, Rees J, et al. DNA
repair gene polymorphisms and genetic predisposition to cutaneous
melanoma. Carcinogenesis 2007; 28:10871093.
Halsall JA, Osborne JE, Epstein MP, Pringle JH, Hutchinson PE. The
unfavorable effect of the A allele of the vitamin D receptor promoter
polymorphism A-1012G has different mechanisms related to susceptibility
and outcome of malignant melanoma. Dermatoendocrinology 2009;
1:5457.
Vuceljic M, Ilic-Stojanovic O, Lazovic M, Grajic M. Vitamin D and parathyroid
hormone in relation to bone mineral density in postmenopausal women.
Vojnosanit Pregl 2012; 69:243248.
Novakovic R, Cavelaars AE, Bekkering GE, Roman-Vinas B, Ngo J,
Gurinovic M, et al. Micronutrient intake and status in Central and Eastern
Europe compared with other European countries, results from the
EURRECA network. Public Health Nutr 2013; 16:824840.
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