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BMS2052
Microbes in health and disease
Semester 2, 2016
Handbook link:
http://www.monash.edu.au/pubs/2016handbooks/units/index-byfaculty-med.html
Table of contents
BMS2052 Microbes in health and disease - Semester 2 - 2016
Table of contents
Unit handbook information
Synopsis
Mode of delivery
Workload requirements
Unit relationships
Prerequisites
Prohibitions
Co-requisites
Chief Examiner(s)
Unit coordinator(s)
Administrative contact
Academic overview
Learning outcomes
Teaching approach
Assessment summary
Assessment requirements
Assessment tasks
Referencing requirements
13
Assignment submission
13
Returning assignments
14
Resubmission of assignments
14
14
Examination(s)
15
15
15
16
16
17
17
18
Required resources
18
Technological requirements
18
Recommended resources
19
19
Study resources
19
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Online resources
Other information
19
19
Policies
19
Academic Integrity
20
20
20
20
Police Checks
20
20
20
Student Charter
20
Student Services
20
21
21
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Mode of delivery
Clayton (Day)
Workload requirements
3 lectures and one 3-hour laboratory class or tutorial/discussion session per week.
Students will have up to 3 lectures per week. With regard to practicals and tutorials, all students
will be allocated into one of two streams (either A or B). Stream A will attend one 3-hour practical
class per week for the first six weeks of semester then one 2-hour tutorial per week for Weeks 7 to
12. Students in Stream B will do the tutorials in Weeks 1 to 6 and practicals in Weeks 7 to
12.Students are also expected to spend approximately 6 hours per week on study, assignments
and practical reports.
Unit relationships
Prerequisites
BMS1062.
Prohibitions
MIC2022.
Co-requisites
Must be enrolled in one of the following:
Chief Examiner(s)
BMS2052 Microbes in health and disease - Semester 2 - 2016
Chief Examiner(s)
Professor Brian Cooke
Unit coordinator(s)
Professor Brian Cooke
Unit Coordinator:
Brian Cooke
Campus:
Clayton
Phone:
61 3 9902 9146
Email:
Brian.cooke@monash.edu
Office hours:
Administrative contact
StudentAdministrator:Kana Gudan
Location: Reception, School of Biomedical Sciences, 23 Innovation Walk
Office Hours: 9am to 5pm, Monday to Friday.
Phone: 9902 6011
or submit an enquiry at
http://my.monash.edu/ask.monash
Academic overview
Learning outcomes
Upon successful completion of this unit, students should be able to:
1. Explain the importance of micro-organisms in health and disease;
2. Describe how host and pathogenic factors of micro-organisms affect the outcome of
infection;
3. Describe basic mechanisms of immunity to infection and the development and use of
vaccines;
4. Explain how infectious diseases are spread, tracked and controlled, and the susceptibility
and resistance of microbial pathogens to antimicrobial agents;
5. Describe some examples of microbial pathogens including bacteria, viruses, fungi and
parasites, the diseases that they cause, their mechanisms of pathogenesis, and treatment;
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Teaching approach
BMS2052 Microbes in health and disease - Semester 2 - 2016
Teaching approach
This unit focuses on the interaction between microbes with each other and other types of living
forms including humans. A high proportion of marks (50%) will be given for the laboratory work,
reflecting our belief that the development of practical skills and confidence in the laboratory is very
important. A major objective of this unit is to give students sufficient grounding so that they can
begin to act as competent microbiologists in all disciplines and relevant areas.
Continuous assessment is used throughout the semester. The assessments structure is outlined
later.
Assessment summary
Assessment task
Value
Due date
10%
10%
Quizzes
4% ( 2% for each
quiz)
Proformas
4% ( 2% for each
proforma)
03%
4% ( 2% practical
classes + 2%
tutorials)
Semester long
Mid-semester exam
10%
To be advised
40%
To be advised
25%
To be advised
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Assessment requirements
Students are required to note the Facultys assessment policy (item 1.2.1) regarding threshold standards at:
http://www.med.monash.edu.au/policies/assessment-policy.html
Students are required to refer to the University Academic Integrity policy and procedure at:
http://www.policy.monash.edu.au/policy-bank/academic/education/conduct/student-academic-integrity-policy.html
The procedures state that:
Proofreading: The process of identifying errors and suggesting corrections to a text. This must not involve rewriting passages of text in
order to clarify meaning; amending the words used by the author (except to identify the correct spelling of the word used); rearranging
passages of text or code, or reformatting other material; contributing additional material to the original; and checking calculations or
formulae.
Academic Integrity and Technology
In line with the Acceptable Use of Information Technology Facilities by Students Procedures, students are not permitted to use
Information and Communications Technology facilities to sell, purchase or offer to write assignments or other assessable work, or to
request help with such work. Furthermore, students are required to take steps to minimise opportunities for others to cheat by, for
example, not saving work to a shared network drive that is accessible by others and not sharing work on social media sites. Failure to
comply with these requirements may result in disciplinary action under Part 7 of the Monash University (Council) Regulations for
collusion or general misconduct, as appropriate in the circumstances.
Students should be aware that the University will monitor and act on information received about the use of cheat sites, paper mills and
other online resources that promote dishonest academic conduct. If a student has been found to have used any of these sources to
breach the Student Academic Integrity Policy, the University will pursue the matter in accordance with Part 7 of the Monash University
(Council) Regulations.
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Assessment tasks
Assessment title:Stream A -Report on the Ex 3 Handwashing - How effective can it be?
Alignment with learning outcome(s):
Explain the importance of micro-organisms in health and disease;
Explain how infectious diseases are spread, tracked and controlled, and the susceptibility and resistance of microbial pathogens to
antimicrobial agents;
Demonstrate knowledge of microbiological methodology and laboratory skills that are used to study and diagnose microbial pathogens.
Details of task:Formal Report as per instructions provided in the Practical Manual on Pages 73 - 79 and also the Powerpoint slides on
the Moodle site
Release date (where applicable):25.07.2016
Due date:23 (Tue Gps), 24 (Wed Gps), 25 (Thu Gps) August
Word limit:not applicable
Value:10%
Presentation requirements:not applicable
Estimated return date:30/8, 31/8 &1/9
Hurdle requirements (where applicable):Must attend a minimum of 50% of each of the particular practical components
Individual assessment in group tasks (where applicable):individual
Criteria for marking:Provided in the Practical Manual (Page 81) and Introduction session Slides and rubric provided in the moodle site
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Details of task:Formal Report as per instructions provided in the Practical Manual on Pages 73 - 79 and also the Powerpoint slides on
the Moodle site
Release date (where applicable):25.07.2016
Due date:04/10 (Tue), 05/10 (Wed), 06/10 (Thu)
Word limit:not applicable
Value:10%
Presentation requirements:individual
Estimated return date:18/10, 19/10 & 20/10
Hurdle requirements (where applicable):Must attend a minimum of 50% of each of the particular practical components
Individual assessment in group tasks (where applicable):none
Criteria for marking:Provided in the Practical Manual (Page 81) and Introduction session Slides and rubric provided in the Moodle site
Assessment title:Quizzes
Alignment with learning outcome(s):Explain the importance of micro-organisms in health and disease;
Demonstrate knowledge of microbiological methodology and laboratory skills that are used to study and diagnose microbial pathogens.
Details of task:This is to ensure that students read their manuals and are prepared for the days work in the laboratory. It will cover
material taught in the previous week in the practical class and the week that the quiz is been held
Release date (where applicable):25/07/2016
Due date:Stream A - Weeks 3 and 5 Stream B- Weeks 9 & 11
Word limit:not applicable
Value:4% ( 2% for each quiz)
Presentation requirements:none
Estimated return date:Week after the quiz date
Hurdle requirements (where applicable):Must attend the day the quiz is being run.
Individual assessment in group tasks (where applicable):none
Criteria for marking:Given on the question paper
Assessment title:Proformas
Alignment with learning outcome(s):Describe some examples of microbial pathogens including bacteria, viruses, fungi and parasites,
the diseases that they cause, their mechanisms of pathogenesis, and treatment;
Demonstrate knowledge of microbiological methodology and laboratory skills that are used to study and diagnose microbial pathogens.
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Details of task:Two proformas will be done by each stream. Each proforma/quiz will cover material performed over a two week period.
Release date (where applicable):25/07/2016
Due date:Stream B - Weeks 3 & 5 and Stream A - Weeks 9 & 11
Word limit:not applicable
Value:4% ( 2% for each proforma)
Presentation requirements:none
Estimated return date:1 week after the due date
Hurdle requirements (where applicable):Must attend the tutorial sessions
Individual assessment in group tasks (where applicable):yes
Criteria for marking:Given on the question paper
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Referencing requirements
BMS2052 Microbes in health and disease - Semester 2 - 2016
12
Referencing requirements
To build your skills in citing and referencing, and using different referencing styles, see the online
tutorial Academic Integrity: Demystifying Citing and Referencing at
www.lib.monash.edu/tutorials/citing/
Students should follow the referencing style given in the PracticalManual.
To build your skills in citing and referencing, and using different referencing styles, see the online
tutorial Academic Integrity: Demystifying Citing and Referencing at www.lib.monash.edu.au
/tutorials/citing/
Assignment submission
Online submission
1) Students are required to submit continuous formative/summative assessment items (where
appropriate) via the Universitys online Learning Management System - Moodle. Assessments
must include a cover sheet. The cover sheet is accessible at: http://www.med.monash.edu.au
/current/student-forms.html.
2)Students must retain a copy of the assessment for their records.
3)No hard copy submissions will be permitted for those assessments requiring online submission.
If the assessment/plagiarism/collusion declaration is being used within Moodle for an assessment
item a separate assignment coversheet is not required.
Please keep a copy of tasks completed for your records.
Hard copy submission: Where hard copy submission is necessary, assignments must includea
cover sheet. The cover sheet is accessible via the Monash portal page located at http://my.
monash.edu under the heading "Learning and Teaching tools". Please keep a copy of tasks
completed for your records.
Hard copy submission
Assignments must include a cover sheet. The coversheet is available at the end of the Practical
Manual.Please keep a copy of tasks completed for your records. A detailed written report in the
format described in the Techniques Manual must be handed in for nominated exercises to the tutor
on the day its due. These must be submitted one week after completion of the experiment.
Students must also submit an electronic copy of their full report into Turnitin and obtain a receipt.
The copy of the analysed detail Turnitin report must be emailed to the tutor the same day that the
report is due.
Reports will not be marked by the tutor unless it has been submitted into Turnitin and the Turnitin
report has also been received by the tutor. According to Faculty of Medicine, Nursing and Health
Sciences policy 2nd and 3rd year students have only one go into Turnitin.
Please note that students must not submit their reports into other Unit Turnitin sites.
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Please note that students must not submit their reports into other Unit Turnitin sites.
Returning assignments
Marked reports will be handed back to the students by their demonstrators two weeks after the
date of submission
Resubmission of assignments
Faculty policyhttp://www.med.monash.edu.au/policies/assessmentr.html
You may also be eligible for special consideration if you can show your obligation to:
1.
2.
3.
4.
military service
jury service
emergency services such as the Country Fire Authority
Monash Sport's athlete support program, if you are participating in a key event.
Reports handed in late will incur a penalty of 10% per day unless prior permission has been
obtained. No grades will be given for reports submitted after 07 calendar dates (this includes
weekends and public holidays) from the due date (Faculty of Medicine policy). Students absent for
more than 50% of the experiment will not be given a grade for the practical assessed.
If the assessment item is more than 07 days overdue the work may be submitted, it will be marked,
but not graded. A zero grade will be awarded.
No reports will be accepted after the corrected reports have been handed back to students.
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BMS2052 Microbes in health and disease - Semester 2 - 2016
No reports will be accepted after the corrected reports have been handed back to students.
Examination(s)
Title:Mid-semester exam
Value:10%
Details:TheMid-semester examwill be held on Wednesday 7September at5.15pm*,at the
Clayton Campus ( EH2, EH3, EH4 & E3). The exam will be of 45 minutes duration and worth 10%
(10% from the lectures from Weeks 1-6) of the final mark.
Feedback to you
http://www.med.monash.edu.au/policies/assessmentf.html
Written & Verbal comments: Your Tutors will give you written feedback on all assignments
submitted and also speak to you individually about your work.
Feedback to the whole class, to groups, to individuals: Your tutors would be giving you continuous
feedback on your lab skills etc., during the lab sessions. Students should make use of this period
to discuss any issues they might have with their work, etc.
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Unit Schedule
BMS2052 - LECTURE TIMETABLE 2016
Mon 3.00 pm (South 1); Tue 2.00 pm (R1); Thu 1.00 pm (R1)
WEEK
DATE
July
August
September
7
LECTURE
LECTURER
25
BM. Cooke
26
26
28
28
01
02
04
08
09
11
15
16
18
22
23
25
M. Mohideen
29
F. Fowkes
30
01
NO LECTURE
05
Vaccination -1
06
Vaccination -2
07
BM. Cooke
H. Netter
M. Wright
S. Bowden
M. Hughes
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BMS2052 Microbes in health and disease - Semester 2 - 2016
08
NO LECTURE
12
13
15
NO LECTURE
19
Helicobacter pylori - 1
20
Helicobacter pylori - 2
22
J. Garcia-Bustos
M. Hutton
11
12
October
03
Clostridial infections - 1
04
Clostridial infections - 2
06
Clostridial infections - 3
10
Parasitic diseases - 1
11
Parasitic diseases - 2
13
Parasitic diseases - 3
17
18
20
Revision lecture
D. Lyras
BM. Cooke
S. McGowan
Your feedback to us
One of the formal ways students have to provide feedback on teaching and their learning
experience is through the Student Evaluation of Teaching and Units (SETU) survey. The feedback
is anonymous and provides the Faculty with evidence of aspects that students are satisfied with
and areas for improvement.
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BMS2052 Microbes in health and disease - Semester 2 - 2016
If you wish to view how previous students rated this unit, please go to
https://emuapps.monash.edu/unitevaluations/index.jsp
Learning resources
Learning resources
Online revision quizzes available on the moodle site
Required Resources
Students generally must be able to complete the requirements of their course without the
imposition of fees that are additional to the student contribution amount or tuition fees. However,
students may be charged certain incidental fees or be expected to make certain purchases to
support their study. For more information about this, go to Administrative Information for Higher
Education Providers: Student Support, Chapter 21, Incidental Fees at:
www.deewr.gov.au/HigherEducation/Resources/Pages/AdminInfoForProviders.aspx
http://readinglists.lib.monash.edu/index.html
Required resources
Students generally must be able to complete the requirements of their course without the
imposition of fees that are additional to the student contribution amount or tuition fees. However,
students may be charged certain incidental fees or be expected to make certain purchases to
support their study. For more information about this, refer to the Higher Education Administrative
Information for Providers, Chapter 18, Incidental Fees at
http://education.gov.au/help-resources-providers
Technological requirements
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BMS2052 Microbes in health and disease - Semester 2 - 2016
Students must use Moodle as their definitive Learning Management System. Turnitinis
compulsoryfor student use.
Recommended resources
Prescribed text(s) and readings
Goering,R.V., Dockrell, H.M., Zuckerman, M., Wakelin, D., Roitt, I.M., Mims, C., and Chiodini. P.L.,
2012. Mims Medical Microbiology, 5th ed. Elsevier International Limited, UK.
OR
Willey, J.M., Sherwood, L.M. and Woolverton, C.J. 2014. Prescotts Microbiology, 9th
ed. WmCBrown, Dubuque IA.
Murray, PR, Rosenthal, KS, Kobayashi, GS and Pfaller, MA. 2009. Medical Microbiology, 7th
ed. Mosby International Limited, UK.
Study resources
A Laboratory Manual and a supporting Techniques Manual will be distributed to all students free of
cost at the beginning of the semester.
Online resources
A set of web pages for the unit has been developed. These materials can be accessed from your
own personalised my.monash portal page. The material placed on Moodle site will be lecture
slides as well as the Study Guides and the Unit Guide Book. Also, any other relevant information,
documentation, links to websites may be placed on the Moodle site.
Other information
Policies
Monash has educational policies, procedures and guidelines, which are designed to ensure that
staff and students are aware of the University's academic standards, and to provide advice on how
they might uphold them. You can find Monash's Education Policies at:
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BMS2052 Microbes in health and disease - Semester 2 - 2016
they might uphold them. You can find Monash's Education Policies at:
http://www.policy.monash.edu/policy-bank/academic/education/index.html
Academic Integrity
http://www.med.monash.edu.au/current/plagiarism.html
http://www.policy.monash.edu.au/policy-bank/academic/education/conduct/student-academicintegrity-policy.html
http://www.policy.monash.edu.au/policy-bank/academic/education/conduct/student-academicintegrity-managing-plagiarism-collusion-procedures.html
Police Checks
http://www.med.monash.edu.au/current/police-checks.html
Student Charter
www.monash.edu/students/policies/student-charter.html
Student Services
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BMS2052 Microbes in health and disease - Semester 2 - 2016
The University provides many different kinds of services to help you gain the most from your
studies.Contact your tutor if you need advice and see the range of services available at
www.monash.edu/students
Website:http://monash.edu/disability
Telephone: 03 9905 5704 to book an appointment with an Adviser;
Email:disabilitysupportservices@monash.edu
Drop In: Level 1, Western Annexe, 21 Chancellors Walk (Campus Centre) Clayton Campus
Copyright Monash University 2016. All rights reserved. Except as provided in the Copyright Act 1968, this work may
not be reproducedin any form without the written permission of the host Faculty and School/Department.
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BMS2052 Microbes in health and disease - Semester 2 - 2016