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DOI 10.1007/s10482-013-0093-0
ORIGINAL PAPER
Received: 1 September 2013 / Accepted: 7 December 2013 / Published online: 24 December 2013
Springer Science+Business Media Dordrecht 2013
Introduction
The genus Nocardia belongs to the family Nocardiaceae (Goodfellow and Lechevalier 1989). Members
of this genus are found worldwide in the soil, some are
non-pathogenic and some causes nocardiosis (Goodfellow 1998). The genus encompasses aerobic, Gram-
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method (Chung et al. 1999) and a simple fluorimetric method for estimation of DNADNA relatedness
was based on thermal denaturation temperatures
(Gonzalez and Saiz-Jimenez 2005). DNADNA
relatedness was calculated as the mean of triplicate
measurements.
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Fig. 1 Scanning electron micrograph of strain VRC07T grown on ISP 2 medium for 14 days at 30 C. Bar 10 lm
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DNADNA relatedness values below the 70 % cutoff point. Although, the strain VRC07T showed
relatively high 16S rRNA gene sequence similarities
between the nearest relatives. The levels of DNA
DNA relatedness with these three strains were
47.4 2.7, 43.3 1.9 and 38 2.3 %, respectively. These values were below the threshold value
of 70 % recommended by Wayne et al. (1987) for
assignment of strains to the same species, suggesting
strongly that the strain VRC07T represents a novel
species of the genus Nocardia.
Chemotaxonomic characteristics
The results of chemical analysis indicated that strain
VRC07T has chemotaxonomic markers characteristic
of the genus Nocardia. The strain contains mesodiaminopimelic acid as the wall diamino acid. Arabinose and galactose were detected as the major
components of sugars in whole-cell hydrolysates.
The predominant menaquinone was MK-8(H4, x-cycl).
The polar lipids were phosphatidylinositol, diphosphatidylglycerol, and phosphatidylglycerol. In the
TLC analysis revealed that the strain contained monoand di-unsaturated mycolic acids with 52, 54 and 56
Characteristics
447
Aerial mycelium
White
White
White
Pale orange
Substrate mycelium
White
Orange-coral
Light-orange
Orange
Soluble pigment
None
None
None
None
NaCl tolerance(%,w/v)
05
07
09
05
Temperature range(C)
440
1045
2545
2545
Adenine
Casein
?
?
Chitin
Elastine
Starch
Tyrosine
Xanthine
Hypoxanthine
Reduction of nitrate
L-Arabinose
D-Galactose
D-Lactose
D-Maltose
Colour of
Degradation of
D-Raffinose
L-Rhamnose
D-Sucrose
?
?
?
?
?
?
?
-
D-Xylose
L-Aspargine
L-Histidine
L-Lysine
L-Serine
L-Valine
L-Glutamic
acid
Taxonomic conclusion
The results of morphological and chemotaxonomic
investigations and phylogentic analysis supported the
affiliation of strain VRC07T to the genus Nocardia.
However, strain VRC07T could be distinguished from
its closest relatives by many phenotypic characteristics, such as differences in the degradation of chitin,
starch, casein and production of soluble pigment only
on ISP 4 medium, assimilation of sole carbon and
nitrogen sources and the acid production, in tolerance
to NaCl, in the temperature ranges for growth and in
the composition of fatty acids. In conclusion, strain
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448
54
67
98
92
65
59
88
83
93
100
nodes are percentage bootstrap support values (1,000 replicates). Mycobacterium sphagni DSM 44076T (FR733719) taken
as an outgroup. Only values [50 % are given. Bar 0.01
nucleotide substitutions per position
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449
C10:0
0.52
C11:0
1.09
C12:0
Anteiso-C13:0
Anteiso-C15:0
0.68
C14:0
1.97
C15:0
0.56
1.92
1.10
1.31
2.7
1.0
C16:0
31.13
34.26
32.14
C17:0
1.97
0.92
1.00
0.63
C18:0
8.77
9.79
14.67
13.32
Iso-C17:1 w10c
0.51
1.9
Iso-C15:1 G
Iso-C15:0
Iso-C17:1 w10c
0.54
Iso-C20:0
0.81
C13:1 at 1213
1.62
1.78
2.45
30.62
1.32
0.57
0.65
1.02
1.45
2.53
Cis-9-C16:1
Cis-8-C17:1
1.55
Cis-9-C18:1
12.45
C15:1 w8c
0.63
0.56
C15:1 w5c
0.58
0.69
C17:1 w8c
1.24
1.11
12.45
0.56
1.56
0.54
1.13
C18:1 w9c
4.87
0.60
14.07
C18:1 w7c11-methyl
1.67
1.14
0.98
0.52
0.78
1.11
8.61
10.81
11.53
C17:0 10-methyl
C18:0 10-methyl
13.55
2.67
Iso-C19:1I
C16:1 3-OH
C17:1 3-OH
2.36
C16:1 2-OH
1.12
C18:0 2-OH
1.00
1.62
0.87
21.07
6.23
Sum in feature 6a
1.11
Sum in feature 7a
0.72
Sum in feature 8a
3.93
Sum in feature 9a
0.62
Sum in feature 1a
Sum in feature 3
1.23
1.16
1.18
8.36
16.36
1.57
1.35
0.60
1.76
0.58
3.60
0.61
Sum in features are groups of two or three fatty acids that cannot be
separated by GC with the MIDI system
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450
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