Professional Documents
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Yersinia
Professor of Bacteriology, Department of Bacteriology and Immunology, Haartman
Institute, University of Helsinki, Finland
Head of Laboratory, Department of Bacteriology, Helsinki University Central
Hospital Laboratory, Helsinki, Finland
Yersiniae
08/11/2011
INTRODUCTION
Yersiniae belong to the family Enterobacteriaceae
17 species
enteropathogens
Y. pestis causes bubonic and pneumonic plague
08/11/2011
Genus Yersinia
Y. enterocolitica
-subsp palearctica
- subsp enterocolitica
Y. pestis
Y. pseudotuberculosis
Y. ruckerii
1939
1894
1883
1979
17 species
Pathogens and environmental strains
Y. aldovae
Y. aleksiciae
Y. bercovieri
Y. entomophaga
Y. frederiksenii
Y. intermedia
Y. kristensenii
Y. massiliensis
Y. mollareti
Y. nurmii
Y. pekkanenii
Y. rohdei
Y. similis
1984
2005
1988
2010
1980
1980
1980
2008
1988
2010
2010
1987
2008
The
Yersinia
infections
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08/11/2011
Bacterium enterocoliticum
Pasteurella pseudotuberculosis-like
Pasteurella pseudotuberculosis type B
Pasteurella X
Pasteurella Y
Germe X
Y. enterocolitica in 1964
7
Bacteriological Properties
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08/11/2011
Y. aldovae
Y. aleksiciae
Y. bercovieri
Y. entomophaga
Y. frederiksenii
Y. intermedia
Y. kristensenii
Y. mollaretii
Y. nurmii
Y. pekkanenii
Y. rohdei
Y. similis
08/11/2011
Non-pathogenic species
10
Y. ruckeri
08/11/2011
11
Infections
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12
Evolutionary Remarks
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13
>90 %
Y. enterocolitica
~50 %
Other Enterobacteria
<20 %
08/11/2011
14
Evolutionary Remarks
Yersinia ancestor
42187 Myrs
Y. pstb ancestor
0.4 to 1.9 Myrs
Y. enterocolitica
~50 % identical
Y. pstb serotypes
<20000 years (last estimate ~5000 yr)
Y. pestis
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15
3 pandemics
1st: 541-700
2nd: 1347-1700
3rd: 1855-1920
prehistoric plague in
Middle-Asian plateau ?
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08/11/2011
17
war in Vietnam
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18
Lifecycle of plague
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19
Lifecycle of plague
In the flea
blood in aesophagus
contaminated with bacteria
regurgitated back into wound
10000 - 25000 bacteria
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20
Lifecycle of plague
In the mammal
proliferates explosively
a bubo forms = swollen lymph node
bacteria gain entry to bloodstream
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21
Lifecycle of plague
In the mammal
To spread efficiently
sepsis is needed
high enough concentration of bacteria
flea gets infected while eating
22
Lifecycle of plague
In the mammal
Death is caused by
degrading bacteria
23
Evolution of
Y. pestis
genomes .
Morelli et al. Nat Gen. 2010
08/11/2011
24
Fully parsimonious minimal spanning tree of 933 SNPs for 282 isolates of Y. pestis colored by location.
Morelli et al. Nat Gen. 2010
country-specific lineages
08/11/2011
25
Evolutionary Remarks
Yersinia ancestor
42187 Myrs
Y. pstb ancestor
0.4 to 1.9 Myrs
Y. enterocolitica
~50 % identical
Y. pstb serotypes
horizontal
<20000 years (lastMLST
estimate
~5000 yr)gene transfer
Y. pestis
08/11/2011
26
Y. pseudotuberculosis s.s.
Y. pestis
Y. similis
Korean group
08/11/2011
27
MLST
Continents
Asia
Europe
-collection bias?
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28
MLST
Serotypes
Flaws in serotyping ?
Horizontal gene transfer HGT
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29
MLST
Serotypes O:6
Flaws in serotyping ?
Horizontal gene transfer HGT
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30
MLST
Serotypes O:7
Flaws in serotyping ?
Horizontal gene transfer HGT
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31
MLST
Serotypes O:9
Flaws in serotyping ?
Horizontal gene transfer HGT
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32
MLST
Serotypes O:11
Flaws in serotyping ?
Horizontal gene transfer HGT
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33
MLST
Serotypes O:15
Flaws in serotyping ?
Horizontal gene transfer HGT
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34
MLST
Serotypes O:2
Flaws in serotyping ?
Horizontal gene transfer HGT
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35
MLST
Serotypes O:2
Flaws in serotyping ?
Horizontal gene transfer HGT
O:2a
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MLST
Serotypes O:2
Flaws in serotyping ?
Horizontal gene transfer HGT
O:2b
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37
MLST
Serotypes O:2
Flaws in serotyping ?
Horizontal gene transfer HGT
O:2c
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38
MLST
Serotypes
Flaws in serotyping ?
Horizontal gene transfer HGT
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39
MLST
Serotypes
Y. pestis
O:1b
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O:1a
40
Y. enterocolitica
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Reservoir
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Reservoir
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Transmission by Food
Infected vegetables
44
Heterogeneity of Y. enterocolitica
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Y. enterocolitica Biotypes
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1A
1B
Pyrazinamidase
Tween esterase
Indole
(+)
Xylose
Trehalose
NO3
46
Y. enterocolitica Serotypes
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47
Y. enterocolitica Serotypes
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48
LPS types
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49
Y. enterocolitica Types
2006
in Finland
human are
isolates:
Biotype
1A462strains
non-pathogenic
O:3 77
Ubiquitous
O:9
5
Often
1A
299 found in food and in the environment
Y.e.
strains 79 encountered in the
Are-like
occasionally
Y. frederiksenii, Y. bercovieri, Y. mollaretii
digestive tract of animals and humans
Anja Siitonen KTL
Many O-antigens
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50
FE80202 O:8
FE80216 O:8
FE81891 O:8
FE81870 O:8
FE80257 O:6
FE81171 O:6
FE80088 O:5
FE80140 O:6
FE80947 O:5
MLST
FE80079 O:5
FE80044
FE82539
FE81507 rough
FE80178 rough
75
FE81536
FE80766
FE81435
FE81225
FE81455 O:6
Y. enterocolitica
ssp. palearctica
BT 1A genetic group I
FE81835
FE81006 O:10
FE83264 O:10
FE80470 O:6
FE82326 O:6
FE81892
FE82588
FE81836 rough
FE81228 rough
FE81875
FE80447 O:8
FE82009
77
FE80648
FE81173
FE80150
FE81890 rough
FE81079
FE81278
FE80938
NCTC 11176 4/O:3
100
FE80016 4/O:3
FE82162 4/O:3
FE83306 4/O:3
FE80665 4/O:3
FE81568 3/O:3
Y. enterocolitica ssp.
palearctica BTs 2-4
FE80256 2/O:9
98 FE83011 2/O:9
100
FE83088 2/O:9
NCTC 11174 2/O:9
8081 1B/O:8
100
FE80647 O:10
100
100
Y. enterocolitica
ssp. enterocolitica
FE81527 O:10
FE81346 O:10
100
100
FE81454 O:10
FE81593 O:10
BT 1A genetic group II
81
91
100
08/11/2011
51
Genus Yersinia
Y. enterocolitica
-subsp palearctica
- subsp enterocolitica
Y. pestis
Y. pseudotuberculosis
Y. ruckerii
1939
1894
1883
1979
17 species
Pathogens and environmental strains
Y. aldovae
Y. aleksiciae
Y. bercovieri
Y. entomophaga
Y. frederiksenii
Y. intermedia
Y. kristensenii
Y. massiliensis
Y. mollareti
Y. nurmii
Y. pekkanenii
Y. rohdei
Y. similis
1984
2005
1988
2010
1980
1980
1980
2008
1988
2010
2010
1987
2008
>90 %
Y. enterocolitica
~50 %
Other Enterobacteria
<20 %
08/11/2011
53
Biotypes
Y. pestis
no
Y. pseudotuberculosis
21
no (2)
Y. enterocolitica
~70
many
LPS O-antigen
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54
Y. pestis
Y. pseudotub.
Y. enterocolitica
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Virulence
LD50
High
<10
Medium
10 -10
Medium - No
10 -10
55
Inhibition of phagocytosis
Fibrillar adhesin
56
Y. pestis genetics
70 kb
plasmid
Genome
4.4 million bp
(Sanger)
Silenced genes
Insertion sequences
08/11/2011
9.5 kb
plasmid
100 kb
plasmid
57
Y. pseudotuberculosis
70 kb
plasmid
Type III Secr.
YadA
Insertion sequences
08/11/2011
58
Y. pstb Y. pestis
70 kb
plasmid
9.5 kb plasmid
Pla
Genome
4.4 million bp
Type III Secr.
LPS, 21 O-serotypes YadA
100 kb plasmid
Invasin
Silenced genes
Insertion sequences
08/11/2011
Fraction 1 Capsule
Murine Toxin
59
How?
100 kb plasmid
9.5 kb plasmid
yadA
inv
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IS-element
YadA-expressing Y.
pestis is less virulent
Rosqvist, Skurnik & WolfWatz. Nature, 1988
60
bacteriophage fR1-37
61
~13 kb
Y. enterocolitica O:3 outer core gene cluster
adk hemH
13.3.1996
gsk
~20 kb
Y. enterocolitica O:8 O-antigen gene cluster
adk
28.3.1996
gsk
hemH
~20 kb
Y. pseudotuberculosis O-antigen
Ye O:8
gene cluster
adk
hemH
30.3.1996
gsk
Goals
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63
Y. pseudotuberculosis O:1b
99.1
90.4
98.3
100
100
99.7
99.8 100
99.8
99.6
99.8
98.7
Y. pestis
Repeats
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64
manA
Paratose
wecA
1,3
1,2
1,4
Mannose
1,3
Mannose
1,3
L-Fucose
1,2
GlcNAcn
08/11/2011
glmS
glmU
65
Paratose
1,3
1,2
1,4
Mannose
1,3
Mannose
1,3
L-Fucose
1,2
GlcNAcn
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66
The mutations
CDP-Paratose biosynthesis
...DdhB
G A T V K G Y S L
T A P T V P S L F E
GGGGCAACGGTAAAAGGTTACTCTCTG..ACCGCCCCCACTGTGCCTAGCCTATTTGAG 2660 O:1b
|||||||||||||||||||||||| ||
|| ||||||| ||||||||||||||||||
GGGGCAACGGTAAAAGGTTACTCTTTG.CCCCCCCCCCACGGTGCCTAGCCTATTTGAG EV76
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
GGGGCAACGGTAAAAGGTTACTCTTTGCCCCCCCCCCCACGGTGCCTAGCCTATTTGAG CO 92
08/11/2011
67
The mutations
O-antigen polymerase
1 bp insertion in wzy of Y.pestis
... Wzy
A G K I F F
I N V L L F V L L E L L K
GCCGGAAAGATTTTTTTT.ATTAATGTGCTTCTATTTGTATTACTTGAGTTATTAAAAGG 11370 O:1b
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
GCCGGAAAGATTTTTTTTTATTAATGTGCTTCTATTTGTATTACTTGAGTTATTAAAAGG Y. pestis
08/11/2011
68
The mutations
Paratosyltransferase
62 bp deletion in wbyI of Y.pestis
... WbyI
I R W I Q K Y G P I K Y N K T K V S Y Y R I L D N E S M R P
ATTAGGTGGATTCAAAAGTATGGACCAATAAAATATAATAAAACTAAAGTCTCCTATTATAGAATTCTCGATAATGAAAGTATGAGGCCA
||||||||||||||
||||||||||||||
ATTAGGTGGATTCA..............................................................AAAGTATGAGGCCA
08/11/2011
69
The mutations
Fucose
1 bp insertion in gmd of Y.pestis
...Gmd
H G I K R S P
Y A V A K M Y A Y W I T V N
CATGGTATTAAGCGTTCTCC.TTATGCTGTTGCCAAAATGTATGCTTACTGGATTACAGTAA 13900 O:1b
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
CATGGTATTAAGCGTTCTCCTTTATGCTGTTGCCAAAATGTATGCTTACTGGATTACAGTAA Y. pestis
08/11/2011
70
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71
14 repeats in EV76
08/11/2011
....... ATTTGCT
|||||||
ATTTGCT ATTTGCT
||||||| |||||||
ATTTGCT ATTTGCT
ATTTGCT
|||||||
ATTTGCT
|||||||
ATTTGCT
ATTTGCT
|||||||
ATTTGCT
|||||||
ATTTGCT
6 repeats in CO92
72
Evolution of
Y. pestis
genomes .
Morelli et al. Nat Gen. 2010
08/11/2011
73
Anja Siitonen
Mark Achtman et al.
Hiroshi Fukushima
Elisabeth Carniel
Hannu Korkeala
Leila Sihvonen
Susanna Toivonen
Riikka Laukkanen-Ninios
11/8/2011
Thank You!
74