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Microbiology
Definition of Terms:
Antibiotics a drug used to treat
bacterial infections
o Have no effect on viral infections
o Originally, it was a substance
produced by one microorganism
that selectively inhibits the growth
of another
o Synthetic antibiotics, usually
chemically related to natural
antibiotics, have since been
produced that accomplish
comparable tasks.
Probiotics are microorganisms that
provide health benefits when
consumed, as claimed by some.
o the term probioticis currently
used to name ingested
microorganisms associated with
beneficial effects to humans and
animals
Chemotherapeutic agents agent
used to treat cancer administered in
regimens of one oor more cycles,
combining two or more agents over a
period of days to weeks
o Such agents are toxic to cells with
high proliferative rates e.g., to the
cancer itself, but also to the GI
tract (causing nausea and
vomiting), bone marrow (causing
various cytopenias) and hair
(resulting in baldness
Antimicrobial Chemotherapy:
introduction
Drugs have been used for the
treatment of infectious diseases since
the 17th century (e.g., quinine for
malaria, emetine for amebiasis);
However, chemotherapy as a science
began in the first decade of the 20th
century with understanding of the
principles of selective toxicity, the
specific chemical relationships
between microbial pathogens and
drugs, the development of drug
resistance and the role of combined
therapy
Experiments led to the
arsphenamines for syphilis, the first
planned chemotherapeutic regimen.
Microbiology Fundamentals of CHEMOTHERAPHY
Antimicrobial Chemotherapy:
Mechanisms of Action of Antimicrobial
Drugs
Antimicrobial drugs act in one of
several ways: By selective toxicity, By
inhibition of cell membrane synthesis
and function, By inhibition of protein
synthesis, or By inhibition of nucleic
acid synthesis
Selective Toxicity - an ideal
antimicrobial agent exhibits selective
toxicity, which means that the drug is
harmful to a pathogen without being
harmful to the host. Often, selective
toxicity is relative rather than absolute;
this implies that a drug in a
concentration tolerated by the host
may damage an infecting
microorganism.
Selective toxicity may be a
function of a specific receptor
required for a drug attachment,
or it may depend on the
inhibition of biochemical events
essential to the pathogen but not
to the host.
The mechanisms of action of
antimicrobial drugs can be
discussed under four headings:
Inhibition of cell wall
synthesis
Page 1 of 21
Inhibition of cell
membrane function
Inhibition of protein
synthesis (ie., inhibition of
translation and
transcription of genetic
material).
Inhibition nucleic
acid synthesis.
Inhibition of Cell Wall
Synthesis
Bacteria have rigid outer
layer, the cell wall. The cell
wall maintains the shape and
size of the microorganisms,
which has a high internal
osmotic pressure
Injury to the cell wall (eg. By
lysosome) or inhibition of its
formation may lead to lysis of the
cell. In a hypertonic
environments (eg. 20% sucrose),
damaged to cell formation leads
to formation of spherical
bacterial protoplasts from
gram-positive organisms or
spheroplasts from gramnegative organisms; these forms
are limited by the fragile
cytoplasmic membrane.
If such protoplasts or
sphheroplasts are placed in an
environment of ordinary tonicity,
they take up fluid rapidly, swell,
and may explode. Specimens
from patients being treated with
cell wall-active antibiotics often
show swollen or misshapen
bacteria
The cell wall contains a
chemically distinct complex
polymer mucopeptide
(peptidoglycan) consisting of
polysaccharides and a highly
cross-linked polypeptide.
The polysaccharides regularly
contain the amino sugars Nacetylglucosamine and
acetylmuramic acid. The latter is
found only in bacteria.
To the amino sugars are attached
short peptide chains.
The final rigidity of the cell wall is
imparted by cross-linking of the
peptide chains (eg, through
pentaglycine bonds) as a result
of transpeptidation reaction
carried out by several enzymes.
The peptidoglycan layer is much
thicker in the cell wall of grampositive than of gram-negative
bacteria.
All -lactam drugs are selective e
inhibitors of bacterial cell wall
synthesis & therefore active
against growing bacteria/
This inhibition is only one of the
several different activities of
these drugs, but it is the best
understood.
The initial step in drug action
consists of binding of the drugs
to cell receptors (Penicillinbinding proteins; PBS)
There are 3 to 6 PBPs (MW 4-12 x
105 ), some of which are
transpeptidation enzymes.
Different receptors have different
affinities for a drug, and each
may mediate a different effect.
For example: attachment
of Penicillin to one PBP
may result chiefly in
abnormal elongation of the
cell, whereas attachment
to another PBP may lead
to a defect in the
periphery of the cell wall,
with resulting cell lysis.
PBPs are under
chromosomal control, &
mutations may alter their
number or their affinity for
.
After a -lactam drug has
attached to one or more
receptors, the transpepdiation
reaction is inhibited &
peptidoglycan synthesis is
blocked.
The next step probably involves
removal or inactivation of an
inhibitor of autolytic enzymes in
the cell wall.
This activates the lytic enzyme
and results in lysis if the
environment is isotonic
In a markedly hypertonic
environment, the microbes
change to protoplasts or
sphetoplast, covered only by the
fragile cell membrane.
Page 2 of 21
gonorrheae, Hemophilus
influenza & Enterococci)
Chromosomally mediated lactamases may be
constitutively produced (e.g.,
Bacteriodes, Acinetobacter)
or they may be inducible (e.g.,
Enterobacter, Citrobacter,
Pseudomonas).
There is one group of lactamases that is occasionally
found in certain species of gram
(-) bacilli, usually Klebsiella
pneumonia & Escherichia coli.
These enzymes are
termed extendedspectrum -lactamases
(ESBLs) because they
confer upon the bacteria
the additional ability to
hydrolyze the -lactam
rings of Cefotaxime,
Ceftazidime, or
Aztreonam.
The classification of lactamases is complex, based
upon the genetics, biochemical
properties, and substrate affinity
for -lactamase inhibitor
(clavulanic acid).
Clavulanic acid,
sulbactam &
tazobactam are lactamase inhibitors that
have a high affinity for and
irreversibly bind some lactamases (e.g.,
penicillinase of
Staphyloccocus aureus)
but arenot hydrolyzed by
the -lactamase.
These inhibitors protect
simultaneously present
hydrolysable penicillins (e.g.,
ampicillin, amoxicillin, &
ticarcillin) from destruction
Certains penicillings (e.g.,
cloxacillin) also have a high
affinity for -lactamases.
There are two other types of
resistance mechanisms:
Due to the absence of
some penicillins
receptors (penicillinbinding proteins;
PBPs) and occurs as a
Page 3 of 21
result of chromosomal
mutation;
Results from failure of
the -lactam drug to
activate the autolytic
enzymes in the cell
wall.
As a result, the organism is
inhibited but not killed. Such
tolerance has been observed
especially with
staphylococci & certain
streptococci.
Examples of agents acting
by inhibition of cell wall
synthesis: penicillins, the
cephalosphorins,
vancomycin, and
cycloserine.
Several other drugs,
including bacitracin,
teicoplanin, vancomycin,
ristocetin, and novobiocin,
inhibit early steps in the
biosynthesis of the
peptidoglycan.
Since the early stage of
synthesis take place inside
the cytoplasmic membrane,
these drugs must penetrate
the membrane to be
effective.
Inhibition of Cell Membrane
Function
The cytoplasm of all living
cells is bounded by the
cytoplasmic membrane,
which serves as a selective
permeability barrier, carries
out active transport functions,
and thus controls the internal
composition of the cell.
If the functional integrity of
the cytoplasmic membrane is
disrupted, macromolecules
and ions escape from the cell,
and cell damage or death
ensues.
The cytoplasmic membrane of
bacteria and fungi has a
structure different form that
of animal cells, and can be
more readily disrupted by
certain agents.
Consequently, selective
chemotherapy is possible.
Page 4 of 21
aminoglycosides, &
chloramphenicol.
Inhibition of Protein Synthesis:
Aminoglycosides
The mode of action of
Streptomycin has been studied far
more intensively than that of other
aminoglycosides, but all probably
act similarly.
The 1st step is the attachment
of the aminoglycoside to a
specific receptor protein (P 12
in the case of streptomycin)
on the 30S subunit of the
microbial ribosome.
2nd, the aminoglycoside
blocks the normal activity of
the initiation on complex of
peptide formation (mRNA +
formyl methicinine + tRNA)
3rd, the mRNA message is
misread on the recognition
region of the ribosome;
consequently, the wrong
amino acid is inserted into the
peptide, resulting in a
nonfunctional protein.
4th, aminoglycoside
attachment results in the
breakup of polysomes and
their separation into
monosomes incapable of
protein synthesis.
o These activities occur
more or less
simultaneously, and
the overall effect is
usually an irreversible
event killing of the
bacterium
Chromosomal resistance of
microbes to aminoglycosides
principally depends on the lack of
specific protein receptor on the 30S
subunit of the ribosome.
Plasmid-dependent resistance to
aminoglycosides depends on the
production by the microorganism of
adenylylating, phosphorylating, or
acetylating enzymes that destroy
the drugs.
A 3rd type of resistance consist of a
permeability defect, an outer
membrane change that reduces
active transport of the
Microbiology Fundamentals of CHEMOTHERAPHY
acetylating enzymes
that destroy drug.
Microorganisms change their
permeability to the drug
Examples: tetracylines
accumulate in succeptible
bacteria but not in resistant
bacteria.
Resistance to polymyxins is
also associated with change
in permeability to the drugs.
Streptococci have a natural
permeability barrier to
aminoglycosides.
This can be partly overcome
by the simultaneous presence
of a cell wall-active drug.
E.g., a penicillin
Resistance to amikacin and to
some other aminglycsides
may depend on a lack of
permeability to the drugs,
apparently due to an outer
membrane change that
impairs active transport into
the cell.
Microorganisms develop an altered
structural target for the rig
Examples: erythromycinresistant organisms have an
altered receptors on the 50S
subunit of the ribosome,
resulting from methylation of
a 23S riboso,al RNA
Resistance to some
penicillins and
cephalosphorons may
be a function of the
loss or alteration of
PBPs.
Penicillin resistance n
Streptococcus
pneumonia and
enterococcie is due to
altered PBPs.
Microorganisms develop an altered
metabolic pathway that bypasses
the reaction inhibited by the drug.
Example: Some sulfonamineresistant bacteria do not
require extracellular PABA
but, like mammalian cells,
can utilize preformed folic
acid.
Microorganisms develop an altered
enzyme that can still perform its
Page 7 of 21
Page 8 of 21
emergence of mutants
resistant to the other drug
(e.g., rifampin and isoniazid in
the treatment of
tuberculosis);
(3) by avoiding exposure if
microorganisms to a
particularly valuable drug by
limiting its use, especially in
hospitals
3.
4.
5.
6.
Dilution Method:
Graded amounts of antimicrobial
substances are incorporated into
liquid or solid bacteriologic media
Commonly, twofold (log2) dilutions
of the antimicrobial substances are
used
The media are subsequently
inoculated with test bacteria and
incubated
The end point is taken as that
amount of antimicrobial substance
required to inhibit the growth of or
to kill the test bacteria
Agar dilution susceptibility tests are
time-consuming, and their use is
limited to special circumstances
Broth dilution tests were
cumbersome and little used when
dilutions had to be made in test
tubes; however, the advent of
prepared broth dilution series for
many different drugs in
microdilution plates has greatly
enhanced and simplified the method
The advantage of microdilution
broth dilution tests:
o They permit a quantitative
result to be reported,
indicating the amount of a
given drug necessary to
inhibit (or kill) the
microorganisms tested
Diffusion Method:
Disk diffusion test the most widely
used method
A filter paper disk containing a
measured quantity of a drug is
placed on the surface of a solid
Page 12 of 21
Drug-Pathogen Relationships
Environment
o In the host, varying
environmental influences affect
microorganisms located in
different tissues and in different
parts of the body in contrast to
the test tube or Petri dish, where
the environment is constant for
all members of a microbial
population
Microbiology Fundamentals of CHEMOTHERAPHY
Host-Pathogen Relationship
Alteration of tissue response
o The inflammatory response of
the tissue to infections may be
altered if the drug suppresses
the multiplication of
Page 14 of 21
o
o
Susceptibility tests
o Laboratory tests for antibiotic
susceptibility are indicated in the
following circumstances
1. When the microorganism
recovered is of a type that is
often resistant to
antimicrobial drugs (eg, gram
negative enteric bacteria)
2. When an infectious process is
likely to be fatal unless
treated specifically (eg,
mengitis, septicaemia)
3. In certain infections where
eradication of the infectious
organisms requires the use of
drugs that are rapidly
bactericidal, not merely
bacteriostatic (eg, infective
endocarditis)
o
o
o
Mechanisms: Antimicrobialsynergism
o Can occur in several types of
situations. Synergistic drug
combinations must be selected by
complex laboratory procedures
1. Two drugs may sequentially
block a microbial metabolic
pathway. Sulfonamides inhibit
the use of extracellular paminobenzoic acid by some
microbes for the synthesis of
folic acid
o Trimethoprim or
pyrimethamine inhibits the
next metabolic step, the
reduction of dihydro- to
tetrahydrofolic acid
o The simultaneous use of a
sulphonamide plus
trimethoprim is effective in
some bacterial (shigellosis,
salmonellosis, serratia) and
some other infections
(pneumocystosis, malaria)
o Pyrimethamine plus a
sulfonamide or clindamycin is
used in toxoplasmosis
2. A drug such as a cell inhibitor (a
penicillin or cephalosporin) may
enhance the entry of an
aminoglycoside into bacteria and
thus produce synergistic effects
o Penicillins enhance the uptake
of gentamicin or streptomycin
by enterococci
o Thus, ampicillin plus
gentamicin may be essential
for the eradication of
Enterococcus faecalis,
particularly in endocarditis
o Similarly, piperacillin plus
tobramycin may be
synergistic against some
strains of pseudomonas
3. One drug may affect the cell
membrane and facilitate the
entry of the second drug
o The combined effect may
then be greater than the sum
of its parts
o For example, amphotericin
has been synergistic with
flucytosine against certain
fungi (eg, Cryptococcus,
candida)
4. One drug may prevent the
inactivation of a second drug by
microbial enzymes
o Thus, inhibitors of lactamase (eg, clavulanic
acid, sulbactam, tazobactam)
can protect amoxicillin,
ticarcilliin, or piperacillin from
inactivation by -lactamases
o In such circumstances, a form
of synergism takes place
Mechanisms: Antimicrobial antagonism
o Is sharply limited by time-dose
relationships and is therefore a rare
event in clinical antimicrobial
therapy
o Antagonism resulting in higher
morbidity and mortality rates has
been most clearly demonstrated in
bacterial meningitis
o It occurred when bacteriostatic drug
(which inhibited protein synthesis in
bacteria) such as chloramphenicol
or tetracycline was given with a
bactericidal drug such as a penicillin
or an aminoglycoside
o Antagonism occurred mainly if the
bacteriostatic drug reached the site
of infection before the bactericidal
drug; if the killing of bacteria was
essential for cure; and if only
minimal effective doses of either
drug in the pair were present
o Another example is combining lactam drugs in treatment of P
aeruginosa infections (eg, imipenem
and piperacillin, where imipenem is
a potent -lactamase inducer and
Page 18 of 21
o
o
Prophylaxis in Surgery
a major portion of all antimicrobial
drug used in hospitals Is employed
on surgical services with the stated
intent of prophylaxis
several general features of surgical
prophylaxis merit consideration:
1. in clean elective surgical
procedures (ie, procedures
during which no tissue bearing
normal flora is traversed other
than the prepared skin), the
disadvantages of routine
antibiotic prophylaxis (allergy,
toxicity, superinfection) may
outweigh the possible benefits
except when hardware (eg.
Artificial hip joint) is being placed
however, even in clean
herniorrhaphy, a single
preoperative dose of a
cephalosporin resulted in
measurable benefit
2. prophylactic administration of
antibiotics should generally be
considered only if the expected
rate of infectious complications is
3-5%
an exception to this rule is the
elective insertion of
prostheses (cardiovascular,
orthopaedic), where a
possible infection would have
a catastrophic effect
3. The initial dose of systemic
prophylactic antibiotic should be
given at the time of induction of
anesthesia. An exception is
elective colonic surgery, in which
case oral antibiotics should be
given before the procedure
4. Prolonged administration of
antimicrobial drugs tends to alter
Page 21 of 21