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CAMPBELL BIOLOGY IN FOCUS

Urry Cain Wasserman Minorsky Jackson Reece

24
Early Life and
the Diversification
of Prokaryotes
Lecture Presentations by
Kathleen Fitzpatrick and Nicole Tunbridge
2014 Pearson Education, Inc.

Overview: The First Cells


Earth formed 4.6 billion years ago

The oldest fossil organisms are prokaryotes dating


back to 3.5 billion years ago
Prokaryotes are single-celled organisms in the
domains Bacteria and Archaea
Some of the earliest prokaryotic cells lived in dense
mats that resembled stepping stones

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Prokaryotes are the most abundant organisms


on Earth
There are more in a handful of fertile soil than the
number of people who have ever lived
Prokaryotes thrive almost everywhere, including
places too acidic, salty, cold, or hot for most other
organisms
Some prokaryotes colonize the bodies of other
organisms

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Concept 24.1: Conditions on early Earth made


the origin of life possible
Chemical and physical processes on early Earth may
have produced very simple cells through a sequence
of stages
1. Abiotic synthesis of small organic molecules
2. Joining of these small molecules into macromolecules
3. Packaging of molecules into protocells, membranebound droplets that maintain a consistent internal
chemistry
4. Origin of self-replicating molecules

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Synthesis of Organic Compounds on Early Earth


Earths early atmosphere likely contained water
vapor and chemicals released by volcanic eruptions
(nitrogen, nitrogen oxides, carbon dioxide, methane,
ammonia, and hydrogen)
As Earth cooled, water vapor condensed into oceans,
and most of the hydrogen escaped into space

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In the 1920s, A. I. Oparin and J. B. S. Haldane


hypothesized that the early atmosphere was a
reducing environment
In 1953, Stanley Miller and Harold Urey conducted
lab experiments that showed that the abiotic
synthesis of organic molecules in a reducing
atmosphere is possible

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However, the evidence is not yet convincing that the


early atmosphere was in fact reducing
Instead of forming in the atmosphere, the first organic
compounds may have been synthesized near
volcanoes or deep-sea vents
Miller-Urey-type experiments demonstrate that
organic molecules could have formed with various
possible atmospheres
Organic molecules have also been found in
meteorites
Video: Hydrothermal Vent
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Video: Tubeworms

Mass of
amino acids (mg)

Number of
amino acids

Figure 24.3

20

10

200

100

0
1953

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2008

1953

2008

Abiotic Synthesis of Macromolecules


RNA monomers have been produced spontaneously
from simple molecules
Small organic molecules polymerize when they are
concentrated on hot sand, clay, or rock

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Protocells
Replication and metabolism are key properties of life
and may have appeared together
Protocells may have been fluid-filled vesicles with a
membrane-like structure

In water, lipids and other organic molecules can


spontaneously form vesicles with a lipid bilayer

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Adding clay can increase the rate of vesicle formation

Vesicles exhibit simple reproduction and metabolism


and maintain an internal chemical environment

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Relative turbidity, an
index of vesicle number

Figure 24.4

0.4
Precursor molecules plus
montmorillonite clay

0.2

Precursor
molecules only
0
0

40
20
Time (minutes)

60

Vesicle
boundary

1 m

(a) Self-assembly

20 m
(b) Reproduction
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(c) Absorption of RNA

Self-Replicating RNA
The first genetic material was probably RNA,
not DNA
RNA molecules called ribozymes have been found
to catalyze many different reactions
For example, ribozymes can make complementary
copies of short stretches of RNA

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Natural selection has produced self-replicating RNA


molecules
RNA molecules that were more stable or replicated
more quickly would have left the most descendant
RNA molecules
The early genetic material might have formed an
RNA world

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Vesicles with RNA capable of replication would


have been protocells
RNA could have provided the template for DNA, a
more stable genetic material

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Fossil Evidence of Early Life


Many of the oldest fossils are stromatolites, layered
rocks that formed from the activities of prokaryotes
up to 3.5 billion years ago
Ancient fossils of individual prokaryotic cells have
also been discovered
For example, fossilized prokaryotic cells have been
found in 3.4-billion-year-old rocks from Australia

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5 cm

30 m

Figure 24.5

10 m
Stromatolites

Nonphotosynthetic bacteria
Possible
earliest
appearance
in fossil record
4
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Cyanobacteria

Time (billions of years ago)

The cyanobacteria that form stromatolites were


the main photosynthetic organisms for over a
billion years
Early cyanobacteria began the release of oxygen
into Earths atmosphere
Surviving prokaryote lineages either avoided or
adapted to the newly aerobic environment

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Concept 24.2: Diverse structural and metabolic


adaptations have evolved in prokaryotes
Most prokaryotes are unicellular, although some
species form colonies
Most prokaryotic cells have diameters of 0.55 m,
much smaller than the 10100 m diameter of many
eukaryotic cells
Prokaryotic cells have a variety of shapes
The three most common shapes are spheres (cocci),
rods (bacilli), and spirals

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1 m

(a) Spherical

(b) Rod-shaped

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3 m

1 m

Figure 24.6

(c) Spiral

Cell-Surface Structures
A key feature of nearly all prokaryotic cells is their cell
wall, which maintains cell shape, protects the cell, and
prevents it from bursting in a hypotonic environment
Eukaryote cell walls are made of cellulose or chitin

Bacterial cell walls contain peptidoglycan, a network


of modified sugars cross-linked by polypeptides

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Archaeal cell walls contain polysaccharides and


proteins but lack peptidoglycan
Scientists use the Gram stain to classify bacteria by
cell wall composition

Gram-positive bacteria have simpler walls with a


large amount of peptidoglycan
Gram-negative bacteria have less peptidoglycan
and an outer membrane that can be toxic

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Figure 24.7

(a) Gram-positive
bacteria

(b) Gram-negative
bacteria
Carbohydrate portion
of lipopolysaccharide

PeptidoCell glycan
wall layer
Plasma
membrane

Outer
membrane

Cell
wall Peptidoglycan
layer
Plasma membrane

Gram-positive
bacteria

Gram-negative
bacteria

10 m
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Many antibiotics target peptidoglycan and damage


bacterial cell walls
Gram-negative bacteria are more likely to be
antibiotic resistant

A polysaccharide or protein layer called a capsule


covers many prokaryotes

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Figure 24.8

Bacterial
cell wall

Bacterial
capsule

Tonsil
cell

200 nm

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Some bacteria develop resistant cells called


endospores when they lack an essential nutrient
Other bacteria have fimbriae, which allow them to
stick to their substrate or other individuals in a
colony
Pili (or sex pili) are longer than fimbriae and allow
prokaryotes to exchange DNA

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Figure 24.9

Fimbriae

1 m

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Motility
In a heterogeneous environment, many bacteria
exhibit taxis, the ability to move toward or away
from a stimulus
Chemotaxis is the movement toward or away from
a chemical stimulus

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Most motile bacteria propel themselves by flagella


scattered about the surface or concentrated at one
or both ends
Flagella of bacteria, archaea, and eukaryotes are
composed of different proteins and likely evolved
independently

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Figure 24.10

Flagellum

Filament
Hook
Motor

Cell wall

Plasma
membrane
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Rod

Peptidoglycan
layer

20 nm

Figure 24.10a

20 nm
Hook

Motor

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Evolutionary Origins of Bacterial Flagella


Bacterial flagella are composed of a motor, hook,
and filament
Many of the flagellas proteins are modified versions
of proteins that perform other tasks in bacteria
Flagella likely evolved as existing proteins were
added to an ancestral secretory system
This is an example of exaptation, where existing
structures take on new functions through descent
with modification

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Internal Organization and DNA


Prokaryotic cells usually lack complex
compartmentalization
Some prokaryotes do have specialized membranes
that perform metabolic functions
These are usually infoldings of the plasma membrane

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Figure 24.11

1 m

0.2 m

Respiratory
membrane

Thylakoid
membranes

(a) Aerobic prokaryote

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(b) Photosynthetic prokaryote

The prokaryotic genome has less DNA than the


eukaryotic genome
Most of the genome consists of a circular
chromosome

The chromosome is not surrounded by a membrane;


it is located in the nucleoid region
Some species of bacteria also have smaller rings of
DNA called plasmids

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Figure 24.12

Chromosome

Plasmids

1 m

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There are some differences between prokaryotes


and eukaryotes in DNA replication, transcription,
and translation
These allow people to use some antibiotics to inhibit
bacterial growth without harming themselves

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Nutritional and Metabolic Adaptations


Prokaryotes can be categorized by how they obtain
energy and carbon
Phototrophs obtain energy from light
Chemotrophs obtain energy from chemicals

Autotrophs require CO2 as a carbon source


Heterotrophs require an organic nutrient to make
organic compounds

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Energy and carbon sources are combined to give


four major modes of nutrition
Photoautotrophy

Chemoautotrophy
Photoheterotrophy
Chemoheterotrophy

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Table 24.1

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The Role of Oxygen in Metabolism


Prokaryotic metabolism varies with respect to O2
Obligate aerobes require O2 for cellular respiration
Obligate anaerobes are poisoned by O2 and use
fermentation or anaerobic respiration, in which
substances other than O2 act as electron acceptors
Facultative anaerobes can survive with or without O2

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Nitrogen Metabolism
Nitrogen is essential for the production of amino
acids and nucleic acids
Prokaryotes can metabolize nitrogen in a variety of
ways

In nitrogen fixation, some prokaryotes convert


atmospheric nitrogen (N2) to ammonia (NH3)

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Metabolic Cooperation
Cooperation between prokaryotes allows them to use
environmental resources they could not use as
individual cells
In the cyanobacterium Anabaena, photosynthetic
cells and nitrogen-fixing cells called heterocysts (or
heterocytes) exchange metabolic products

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Figure 24.13

Photosynthetic
cells
Heterocyst
20 m

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In some prokaryotic species, metabolic cooperation


occurs in surface-coating colonies called biofilms

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Reproduction
Prokaryotes reproduce quickly by binary fission and
can divide every 13 hours
Key features of prokaryotic biology allow them to
divide quickly
They are small
They reproduce by binary fission
They have short generation times

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Adaptations of Prokaryotes: A Summary


The ongoing success of prokaryotes is an
extraordinary example of physiological and
metabolic diversification
Prokaryotic diversification can be viewed as a first
great wave of adaptive radiation in the evolutionary
history of life

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Concept 24.3: Rapid reproduction, mutation, and


genetic recombination promote genetic diversity
in prokaryotes
Prokaryotes have considerable genetic variation
Three factors contribute to this genetic diversity
Rapid reproduction
Mutation

Genetic recombination

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Rapid Reproduction and Mutation


Prokaryotes reproduce by binary fission, and
offspring cells are generally identical
Mutation rates during binary fission are low, but
because of rapid reproduction, mutations can
accumulate rapidly in a population
High diversity from mutations allows for rapid
evolution
Prokaryotes are not primitive but are highly
evolved

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Figure 24.14

Experiment

Daily serial transfer


0.1 mL
(population sample)

Old tube
(discarded
after
transfer)

New tube
(9.9 mL
growth
medium)

Population growth rate


(relative to ancestral
population)

Results
1.8
1.6

1.4
1.2
1.0
0

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5,000

10,000 15,000
Generation

20,000

Genetic Recombination
Genetic recombination, the combining of DNA from
two sources, contributes to diversity
Prokaryotic DNA from different individuals can be
brought together by transformation, transduction,
and conjugation
Movement of genes among individuals from
different species is called horizontal gene transfer

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Transformation and Transduction


A prokaryotic cell can take up and incorporate
foreign DNA from the surrounding environment in a
process called transformation
Transduction is the movement of genes between
bacteria by bacteriophages (viruses that infect
bacteria)

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Figure 24.15-1

1 Phage infects bacterial

donor cell with A and


B alleles.

Phage DNA
A B

Donor cell

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Figure 24.15-2

1 Phage infects bacterial

donor cell with A and


B alleles.

Phage DNA
A B

Donor cell
2 Phage DNA is

replicated and
proteins synthesized.

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Figure 24.15-3

1 Phage infects bacterial

donor cell with A and


B alleles.

Phage DNA
A B

Donor cell
2 Phage DNA is

replicated and
proteins synthesized.

3 Fragment of DNA with

A allele is packaged
within a phage capsid.

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Figure 24.15-4

Phage DNA

1 Phage infects bacterial

donor cell with A and


B alleles.

A B

Donor cell
2 Phage DNA is
A

replicated and
proteins synthesized.

3 Fragment of DNA with

A allele is packaged
within a phage capsid.

4 Phage with

allele
infects bacterial
recipient cell.

Crossing over
A
A

Recipient
cell

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Figure 24.15-5

Phage DNA

1 Phage infects bacterial

donor cell with A and


B alleles.

A B

Donor cell
2 Phage DNA is
A

replicated and
proteins synthesized.

3 Fragment of DNA with

A allele is packaged
within a phage capsid.

4 Phage with

Crossing over

allele
infects bacterial
recipient cell.

5 Incorporation of phage

DNA creates recombinant


cell with genotype AB.
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A
A

Recipient
cell

Recombinant
cell
A B

Conjugation and Plasmids


Conjugation is the process where genetic material
is transferred between prokaryotic cells
In bacteria, the DNA transfer is one way
In E. coli, the donor cell attaches to a recipient by a
pilus, pulls it closer, and transfers DNA

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Figure 24.16

1 m

Sex pilus

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The F factor is a piece of DNA required for the


production of pili
Cells containing the F plasmid (F+) function as DNA
donors during conjugation
Cells without the F factor (F) function as DNA
recipients during conjugation
The F factor is transferable during conjugation

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Figure 24.17-1

F plasmid
F cell
(donor)

Bacterial
chromosome

Mating
bridge
F cell
(recipient)

Bacterial
chromosome

1 One strand of

F cell plasmid
DNA breaks at
arrowhead.

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Figure 24.17-2

F plasmid
F cell
(donor)

Bacterial
chromosome

Mating
bridge
F cell
(recipient)

Bacterial
chromosome

1 One strand of

F cell plasmid
DNA breaks at
arrowhead.

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2 Broken strand

peels off and


enters F cell.

Figure 24.17-3

F plasmid
F cell
(donor)

Bacterial
chromosome

Mating
bridge
F cell
(recipient)

Bacterial
chromosome

1 One strand of

F cell plasmid
DNA breaks at
arrowhead.

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2 Broken strand

peels off and


enters F cell.

3 Donor and

recipient cells
synthesize
complementary
DNA strands.

Figure 24.17-4

F plasmid
F cell
(donor)

Bacterial
chromosome
F
cell

Mating
bridge
F cell
(recipient)

F
cell
Bacterial
chromosome

1 One strand of

F cell plasmid
DNA breaks at
arrowhead.

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2 Broken strand

peels off and


enters F cell.

3 Donor and

recipient cells
synthesize
complementary
DNA strands.

4 Recipient cell

is now a
recombinant
F cell.

The F factor can also be integrated into the


chromosome
A cell with the F factor built into its chromosomes
functions as a donor during conjugation
The recipient becomes a recombinant bacterium,
with DNA from two different cells

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R Plasmids and Antibiotic Resistance


Genes for antibiotic resistance are carried in R
plasmids
Antibiotics kill sensitive bacteria, but not bacteria with
specific R plasmids
Through natural selection, the fraction of bacteria
with genes for resistance increases in a population
exposed to antibiotics
Antibiotic-resistant strains of bacteria are becoming
more common
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Concept 24.4: Prokaryotes have radiated into a


diverse set of lineages
Prokaryotes have radiated extensively due to
diverse structural and metabolic adaptations
Prokaryotes inhabit every environment known to
support life

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An Overview of Prokaryotic Diversity


Applying molecular systematics to the investigation
of prokaryotic phylogeny has produced dramatic
results
Molecular systematics led to the splitting of
prokaryotes into bacteria and archaea
Molecular systematists continue to work on the
phylogeny of prokaryotes

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The use of polymerase chain reaction (PCR) has


allowed for more rapid sequencing of prokaryote
genomes
A handful of soil may contain 10,000 prokaryotic
species
Horizontal gene transfer between prokaryotes
obscures the root of the tree of life

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Bacteria
Bacteria include the vast majority of prokaryotes
familiar to most people
Diverse nutritional types are scattered among the
major groups of bacteria

Video: Tubeworms
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Figure 24.19a

Beta subgroup

Alpha subgroup

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1 m

Nitrosomonas
(TEM)

Delta subgroup

Epsilon subgroup

Chondromyces
crocatus (SEM)

2 m

Rhizobium (arrows)
(TEM)

300 m

Thiomargarita
namibiensis (LM)

200 m

Gamma subgroup

2.5 m

Alpha
Beta
Gamma Proteobacteria
Delta
Epsilon

Helicobacter pylori
(TEM)

Proteobacteria are gram-negative bacteria including


photoautotrophs, chemoautotrophs, and
heterotrophs
Some are anaerobic and others aerobic

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Members of the subgroup alpha proteobacteria


are closely associated with eukaryotic hosts in
many cases
Scientists hypothesize that mitochondria evolved
from aerobic alpha proteobacteria through
endosymbiosis
Example: Rhizobium, which forms root nodules in
legumes and fixes atmospheric N2
Example: Agrobacterium, which produces tumors in
plants and is used in genetic engineering
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Members of the subgroup beta proteobacteria are


nutritionally diverse
Example: the soil bacterium Nitrosomonas, which
converts NH4+ to NO2

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The subgroup gamma proteobacteria includes


sulfur bacteria such as Thiomargarita namibiensis
and pathogens such as Legionella, Salmonella, and
Vibrio cholerae

Escherichia coli resides in the intestines of many


mammals and is not normally pathogenic

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The subgroup delta proteobacteria includes the


slime-secreting myxobacteria and bdellovibrios, a
bacteria that attacks other bacteria

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The subgroup epsilon proteobacteria contains


many pathogens including Campylobacter, which
causes blood poisoning, and Helicobacter pylori,
which causes stomach ulcers

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Figure 24.19b

Cyanobacteria

Chlamydia (arrows)
(TEM)

5 m

2.5 m

Spirochetes

Oscillatoria

Leptospira
(TEM)

5 m

2 m

Gram-positive bacteria

Streptomyces
(SEM)

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40 m

Chlamydias

Mycoplasmas
(SEM)

Chlamydias are parasites that live within


animal cells
Chlamydia trachomatis causes blindness and
nongonococcal urethritis by sexual transmission

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Spirochetes are helical heterotrophs


Some are parasites, including Treponema pallidum,
which causes syphilis, and Borrelia burgdorferi,
which causes Lyme disease

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Figure 24.19bb

Spirochetes

5 m

Leptospira,
a spirochete
(colorized TEM)

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Cyanobacteria are photoautotrophs that generate O2


Plant chloroplasts likely evolved from cyanobacteria
by the process of endosymbiosis

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Figure 24.19bc

Cyanobacteria

40 m

Oscillatoria,
a filamentous
cyanobacterium

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Gram-positive bacteria include


Actinomycetes, which decompose soil
Streptomyces, which are a source of antibiotics
Bacillus anthracis, the cause of anthrax

Clostridium botulinum, the cause of botulism


Some Staphylococcus and Streptococcus, which can
be pathogenic

Mycoplasms, the smallest known cells

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Figure 24.19bd

Gram-positive bacteria

5 m

Streptomyces,
the source of
many antibiotics
(SEM)

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Figure 24.19be

Gram-positive bacteria

2 m

Hundreds of mycoplasmas
covering a human
fibroblast cell
(colorized SEM)

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Archaea
Archaea share certain traits with bacteria and other
traits with eukaryotes

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Figure 24.UN02

Eukarya
Archaea
Bacteria

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Table 24.2

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Table 24.2a

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Table 24.2b

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Some archaea live in extreme environments and are


called extremophiles
Extreme halophiles live in highly saline
environments

Extreme thermophiles thrive in very hot


environments

Video: Cyanobacteria (Oscillatoria)


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Figure 24.20

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Methanogens produce methane as a waste product


Methanogens are strict anaerobes and are poisoned
by O2
Methanogens live in swamps and marshes, in the
guts of cattle, and near deep-sea hydrothermal
vents

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Recent metagenomic studies have revealed many


new groups of archaea
Some of these may offer clues to the early evolution
of life on Earth

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Concept 24.5: Prokaryotes play crucial roles in


the biosphere
Prokaryotes are so important that if they were to
disappear, the prospects for any other life surviving
would be dim

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Chemical Recycling
Prokaryotes play a major role in the recycling of
chemical elements between the living and nonliving
components of ecosystems

Chemoheterotrophic prokaryotes function as


decomposers, breaking down dead organisms
and waste products

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Prokaryotes can sometimes increase the availability


of nitrogen, phosphorus, and potassium for plant
growth
Prokaryotes can also immobilize or decrease the
availability of nutrients

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Uptake of K by plants (mg)

Figure 24.22

1.0
0.8
0.6

0.4
0.2

Seedlings growing in the lab

0
No
Strain 1 Strain 2 Strain 3
bacteria
Soil treatment

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Ecological Interactions
Symbiosis is an ecological relationship in which
two species live in close contact: a larger host and
smaller symbiont
Prokaryotes often form symbiotic relationships with
larger organisms

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In mutualism, both symbiotic organisms benefit


In commensalism, one organism benefits while
neither harming nor helping the other in any
significant way
In parasitism, an organism called a parasite harms
but does not kill its host
Parasites that cause disease are called pathogens

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The ecological communities of hydrothermal vents


depend on chemoautotrophic bacteria for energy

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Impact on Humans
The best-known prokaryotes are pathogens, but
many others have positive interactions with humans

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Mutualistic Bacteria
Human intestines are home to about 5001,000
species of bacteria
Many of these are mutualists and break down food
that is undigested by our intestines

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Pathogenic Bacteria
Prokaryotes cause about half of all human diseases
For example, Lyme disease is caused by a bacterium
and carried by ticks

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Figure 24.24

5 m

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Pathogenic prokaryotes typically cause disease by


releasing exotoxins or endotoxins
Exotoxins are secreted and cause disease even if
the prokaryotes that produce them are not present
Endotoxins are released only when bacteria die
and their cell walls break down

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Horizontal gene transfer can spread genes


associated with virulence
For example, pathogenic strains of the normally
harmless E. coli bacteria have emerged through
horizontal gene transfer

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Prokaryotes in Research and Technology


Experiments using prokaryotes have led to important
advances in DNA technology
For example, E. coli is used in gene cloning
For example, Agrobacterium tumefaciens is used to
produce transgenic plants

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Bacteria can now be used to make natural plastics


Prokaryotes are the principal agents in
bioremediation, the use of organisms to remove
pollutants from the environment
Bacteria can be engineered to produce vitamins,
antibiotics, and hormones
Bacteria are also being engineered to produce
ethanol from waste biomass

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Figure 24.UN03

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Figure 24.UN04

Fimbriae
Cell wall

Circular
chromosome
Capsule

Sex pilus
Internal
organization

Flagella

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Figure 24.UN05

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