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Chapter 12
Organohalides: Nucleophilic
Substitutions and Eliminations
Javier E. Horta, M.D., Ph.D. University of Massachusetts Lowell
Alkyl Halides
Alkyl halide or haloalkanes
Compounds with a halogen atom bonded to a saturated sp3hybridized carbon atom
Widespread in nature
Alkyl Halides
Other halo-substituted compounds are providing important
leads to new medicines
Alkyl Halides
Alkyl halides are not often involved in the biochemical
pathways of terrestrial organisms
The kinds of reactions they undergo nucleophilic
substitutions and eliminations are frequently
involved
Alkyl halide chemistry acts as a relatively simple
model for many mechanistically similar but
structurally more complex reactions found in
biomolecules
2.
3.
organic chemistry
Explain the transformations taking place in Waldens cycle
Each step involves the substitution of one nucleophile (in
Waldens cycle: chloride ion, Cl-, or hydroxide ion, HO-) by
another
The transition
state of an SN2
reaction has a
planar
arrangement of
the carbon atom
and the remaining
three groups
HS- is more nucleophilic than HOHalide reactivity order is I-> Br-> ClGoing down the periodic table, elements have their
valence electrons in successively larger shells, where
they are successively farther from the nucleus, less tightly
held, and consequently more reactive
Solvents can dissolve many salts because of their high polarity, but
they do not solvate nucleophilic anions very well, making them more
reactive
Barely solvated anions have greater nucleophilicity and SN2
reactions take place at correspondingly faster rates
Example: Reaction of azide ion with 1-bromobutane
Slowest step is
a spontaneous
ionization of the
alkyl halide to
give a
carbocation
intermediate
The Substrate
The more stable the carbocation intermediate, the faster the SN1
reaction
Allylic and benzylic C-X bonds are about 50 kJ/mol (12 kcal/mol)
weaker than the corresponding saturated bonds, making them
easy to break during an SN2 reaction
Leaving group is
neutral water
Carbocation solvation
Nucleophile
Solvent
The substrate in a
biological substitution
reaction is often an
organodiphosphate rather
than an alkyl halide
The leaving group is the
diphosphate ion, PPi,
rather than a halide ion
Diphosphate group is
the biological
equivalent of a halogen
Geraniol
Biosynthesis
A fragrant alcohol
found in roses
and used in
perfumery
Two SN1
reactions occur,
both with
diphosphate ion
as the leaving
group
molecule
In the biosynthesis of epinephrine (adrenaline) from
norepinephrine, the nucleophilic nitrogen atom of
norepinephrine attacks the electrophilic methyl carbon atom
of S-adenosylmethionine, displacing Sadenosylhomocysteine
The major product is the one that has the most highly
1-methylcyclohexene
The E2 Reaction
3.
Anti periplanar
geometry occurs
when the H and the X
are on opposite sides
of the molecule
Syn periplanar
geometry occurs
when the H and the X
are on the same side
of the molecule
The E2 Reaction
The sp3 orbitals in the reactant C-H and C-X bonds must
overlap and become p orbitals in the alkene product
They must overlap in the transition state
The E2 Reaction
Anti periplanar geometry for E2 eliminations has specific
stereochemical consequences
Meso-1,2-dibromo-1,2-diphenylethane undergoes E2
elimination on treatment with base to give only the E alkene
The E2 Reaction
Anti periplanar geometry is particularly important in
cyclohexane rings where chair geometry forces a rigid
relationship between substituents on adjacent carbon atoms
Only if the hydrogen and the leaving group are trans diaxial can an E2
reaction occur
Analogous to the
SN1 reaction
Two steps are
involved in the
reaction, the first of
which is slowest
Carbocation
intermediate is
present
Biosynthesis of fats
They react with weak acids such as H2O, ROH, RCO2H, and
RNH2 to abstract a proton and yield hydrocarbons
Since hydrocarbons are extremely weak acids, with pKas in
the range of 44 to 60, carbon anions are very strong bases
Alkyl halide
Grignard Reagent
Hydrocarbon