Introduction of microbial inoculants to improve fungsional relationship between above- and below-ground bio-diversity
Didiek Hadjar GOENADI & Laksmita Prima SANTI IndonesianBiotechnology Research Institute for Estate Crops, Bogor 16151
Ringkasan
Sebagaimana telah diketahui bahwa keragaman di muka bumi memainkan peran yang sangat penting dalam menciptakan lingkungan yang berkelanjutan. Bagaimana- pun juga, aktivitas manusia sampai tingkat tertentu mengurangi kompleksitas agro- ekosistem. Beberapa di antaranya adalah perubahan proses bio-fisik-kimia yang mengakibatkan tidak dapat menopang produktivitas. Untuk mengatasi masalah ini, banyak upaya telah dipusatkan pada peningkatan aktivitas mikrob di dalam tanah dengan menggunakan teknologi yang disebut bio-fertilizer (pupuk hayati), pengomposan residu tanaman secara modern, dan membatasi penggunaan pestisida sintetik. Teknologi tersebut diyakini dapat meningkat-kan keragaman hubungan antara bagian per- mukaan dan bawah tanah yang akhirnya berkontribusi terhadap perubahan dan membawa fungsi penting secara biologi. Makalah ini memaparkan hubungan keragaman yang menguntungkan secara fungsional antara keaneka-ragaman permukaan dan bawah tanah untuk pengelolaan dan pengembangan pertanian atau perkebunan secara berkelanjutan.
Summary
It has been very well understood that bio- diversity on the earth plays a very important role on governing the sustainability of the environment. However, anthropogenic activities have to some extent reduced drastically the complexity of the agro- ecosystem. Many of these bio-physic-chemical processes will be changed and as a result they can not sustain productivity. To overcome this problem, a great effort was focused at improving microbial activities in the soil by using the so-called bio-fertilizer technology, new-modern composting plant residues, and limited use of synthetic pesticides. It is believed that enhanced relationship between above-and below-ground biodiversity contributes to the re-establishment and able to carry out essential biological functions. This paper discusses functional relationship between above- and below-ground bio-diversity beneficial for sustainable management and plant development.
Global food supply depends on intensive agriculture. In Indonesia, large numbers of farmers have limited access to inputs but are nonetheless forced by circumstances to drastically reduce the complexity of their agro ecosystems in an attempt to intensify production. As intensification proceeds, above-ground biodiversity is reduced, one consequence of which is that the biological regulation of soil processes is altered and often substituted by the use of mechanical
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tillage, chemical fertilizers and pesticides. This is assumed to reduce below-ground diversity. On the other hand, crop productivity is closely related to the ability of plant roots to extract water and nutrients efficiently out of the soils. The function of the roots is governed by an integrated set of biological processes. In addition to plants, soil is the habitat of a diverse array of organisms, which their activities are contribute to the maintenance and productivity of agro ecosystem by their influence on soil fertility. In this case, there are functional relationships between above and below-ground in agro ecosystem. Swift & Bignell (2001) suggested that maintenance of diversity of crops, other plants, and below-ground in cropping systems is widely accepted as a management practice which buffer farmers against short-term risks. Enhanced relationship between above and below-ground biodiversity contributes to the re-establishment and able to carry out essential biological functions. To be more precise, the enhancement of soil biodiversity by the retention of crop residues and other organic matter, induced microbe inoculants, and limitations in the use of pesticides will also have associated labor costs which are part of the assessment on efficiency economic value of management farming. Soil micro- organism especially bacteria and fungi contribute a wide range of essential service to the sustainable function of all ecosystem, such as regulating nutrient cycles and the dynamics of soil organic matter, soil carbon sequestration, green- house gas emission, bioremediation of toxics and pollutants, and enhancing the amount and efficiency of soil nutrient for crops. In the tropical region, the diversity of the soil microorganism (bacteria and fungi) commonly even greater than that of other soil organism. Directly target the joint conservation of both above (crops) and bellow-ground (soil microbial) components of biological diversity will have environmental benefits at ecosystem and agricultural production. This paper is, therefore, aimed to present basic information regarding to microbial inoculants to improve functional relationship between above and below- ground bio-diversity for sustainable management and plantation development.
Potential use of bio-fertilizer to improve functional relationship above- and below-ground bio-diversity
The influence of plants on microbial population structure and function in the rhizosphere has important ecological implications for soil function, including biogeochemical cycles. Similarly, soil microbes have a tremendous influence on plant health and productivity (Bloemberg & Lugtenberg, 2001). For example, large areas of marginal soils in Indonesia have been developed for plantation. These soils have been characterized by low organic matter content, predominant low activity clays, and strongly acid in reaction. These in effect will depress the microbial activities which in turn disturb the nutrient cycle in the soils. On the other hand, under humid-tropic conditions, fertilizer loss through leaching, volatilization, and/or fixation represents an economic loss as well as a potential environmental contamination. A biotechnological approach is then assumed to be able to enhance the emergence of biotechnology in soil management provides a new approach in tackling efficiently many problems which remain unsolved by
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current conventional technology. Mani- pulation of soil microbes offers an efficient technique to stabilize soil aggregates, increase nutrient uptake, control soil-borne pathogen, and accelerate the decomposition of solid organic wastes, without adding new pollutants to the environment. Bio- fertilizers are basically microorganisms which can improve the availability of nutrient to plants. They have been believed to be an important component of sustainable agriculture, as they can reduce significantly the use of chemical fertilizers. It is hypothesized that by improving rhizospheric microbial acti- vities via bio-fertilizer application, nutrient solubilization can be enhanced and consequently less conventional fertilizers will be needed (Goenadi et al., 2005). An efficient bio-fertilizer product i.e. EMAS (Enhancing Microbial Activity in the Soils) has been successfully development by using active ingredients consisting of Azospirillum lipoferum, Azotobacter beijerinckii, Aeromonas punctata, and Aspergillus niger native of tropical soils (Goenadi et al., 2000). The application of 6.25 g EMAS per plant (equivalent with 83.125 kg/ha) + 50% inorganic fertilizer recommended dosage for tea, could reduce application of inorganic fertilizer dosage until 50% and resulted in the growth of the plant which was better than that of inorganic fertilizer (Wachjar et al., 2006). In addition, evaluate the effectiveness of EMAS bio- fertilizer in reducing dosage of conven- tional fertilizers used in corn at Pelaihari, South Kalimantan indicated that based on the current production value and total of cost production, reducing 25, 50 and 75% conventional fertilizer provides the planters with 1.44, 1.13, and 1.12 revenue cost ratio. Yield of dry grain of corn was higher (+41.8%) by application of 75% standard dosage and 1 gram EMAS biofertilizer/tree (53.3 kg/ha) than by standard dosage of conventional fertilizer (Santi et al., 2007). One straightforward and visible benefit for the plant is a better supply of and access to nutrients. The role of mutualistic nitrogen-fixating rhizobia has been well documented for decades, but recent data detail the intimate exchange of nutrients during the symbiosis of plant roots and bacteria (Lodwig et al., 2003). The plant attracts nitrogen-fixating bacteria to invade the cells in the root and provides them with carbohydrates as a food source while the bacteria reduce nitrous compounds in the soil that are then used by the plant. These microbes use root exudates as a source of energy and cellular carbon. Endophytic associations in rice have a N-fixing potential of 150 kg N/ha/year, but are at times unreliable (Shenoy et al., 2001). Similarly, inter- actions between plants and fungi can also provide nutrients for the plant. Arbuscular mycorrhizal fungi, which form an intricate internal symbiosis with the roots of most flowering plants, are associated with the provision of phosphorous to the plant in exchange for organic carbohydrates (Smith & Read, 1997). Microbes also indirectly aid nutrient uptake bacteria of the Azospirillum genus promote increased root mass and more efficient nitrogen uptake from the soil in response to the plant hormone indole-3- acetic acid. Using these bacteria and fungi could provide significant environmental benefits as they would allow a reduction in the application of nitrogen and phos- phorous fertilizers. The overuse of such fertilizers has become a major concern
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because they cause nitrate contamination of soil and groundwater by leachates and because microbial denitrification converts residual nitrogen into the greenhouse gas nitrous oxide (Nosengo, 2003; Reay, 2004). Equally, excess phosphorous compounds leach into groundwater, rivers and streams, where they promote algal growth and other environmental problems. Microbial seed inoculants are able to enhance biological nitrogen fixation. The inoculants are claimed to be cost effective, eco-friendly, renewable and generally capable of supplementing chemical ferti- lizers in sustainable agricultural system. Amongst nitrogen fixing bacteria such as Rhizobium (symbiotic), Azotobacter and Azospirillum (non-symbiotic), the most widely used inoculant is Rhizobium. It has long been known that the inoculation of effective strains of the symbiotic Rhizobium can be beneficial for legu- minous pulses and oilseed (Isherwood, 2002). Inoculation with effective Rhizobium is a well known agronomic practice to insure adequatenitrogen nutrition of legume instead of fertilizer N. Although commercial fertilizer products based on below-ground diversity are already available, their effectiveness depends on the natural conditions and plant clay organic soil and microbe interaction. Regarding the product itself, the inoculants is a living material and there are problem due to the needs to select the most effective strains, the difficulty of quality control, the short shelf-life, and the need to avoid high temperatures in storage. The Food and Fertilizer Technology Center for the Asia and Pacific Region (FFTC, 1997) reported that, while there is an increasing interest in Asia in the use of N-fixing bacteria, the technology of producing and using them still at an early stage. There are a very large number of different microorganisms in microbial products and they are often not identified yet, whereas some are crop-specific. There is a great need for standards, simple and accurate ways of measuring their effectiveness. Therefore, an appropriate management of bio-fertilizer in agriculture and plantation soil quality could be maintained.
Benefits of legume cover crops as above-ground bio-diversity and its relationship with below-ground bio- diversity
In the land farming, legume cover crops can reduce fertilizer costs and herbicide or other pesticides, improve yields by enhancing soil health, prevent soil erosion, conserve soil moisture, protect water quality, and help safeguard personal health. Many legume cover crop offer harvest possibilities as forage, grazing or seed that work well in system with multiple crop enterprises and livestock. For instance, fertilizer recommendation made for oil palm plantation is of higher dosages on non- legume cultivation than on legume cultivation. In addition, Sarrantonio (1998) stated that cover crops provide many benefits, but they are not do-it-all wonder crops. To find a suitable cover crop or mix of covers need to identify the best time and place for a cover crop in farming system. Cover crops improve soil by (i) speeding infiltration of excess surface water, (ii) relieving compaction and improving structure of over tilled soil, (iii) adding organic matter that encourages beneficial soil microbial life, and (iv) enhancing nutrient cycling. Further, nitrogen is a central component of cell
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proteins and is used for seed production. It exists in several chemical forms and various microorganisms are involved in its transformation. Legume cover crops, in association with specialized bacteria called rhizobia are able to convert nitrogen gas in the atmosphere into soil nitrogen that plants can use. Crops grown in fields after legumes can take up at least 30 60 percent of the N by legumes. Consequently, the farmer can reduce N fertilizer applications. The beneficial of N value of legume cover crop could evaluated, both agronomically and economically. The nitrogen provided by N-fixation is used efficiently in natural ecosystems. Sarrantonio (1998) suggest that in an agricultural system, however, soil and crop management factor often interfere with natures ultra-efficient use of organic or inorganic N. Learning a bit about the factors affecting N-use efficiency from legume plants will help build the most sustainable cropping system. Management of above-ground covers is an important aspect of rubber and oil palm cultivation. In these area, Pueraria phaseoloides, Calopogonium caeruleum, and Centrosema pubescens are widely cultivated for rubber and oil palm. Legume cover crops, normally compete successfully against volunteer weed growths, particularly Mikania and Asystasia. Therefore, a good legume cover crops should be maintained for as long as possible after planting. In some environments it will be possible to maintain legume cover crops throughout the life of the rubber and oil palm. Also, Ahmad Tajuddin & Wan Zahari (1991) stated that forage species that grow in oil palm and rubber plantations include all the palatable plant species that thrive under this microenvironment. The leguminous cover crops are grown at early stages of the tree crop development in first five years, and they are gradually replaced by the shade-tolerant species when the canopies close. Some common goals for cover crops are to provide nitrogen, add organic matter, improve soil structure, reduce soil erosion, provide weed control, manage nutrients, and furnish moisture- conserving mulch. Like other plants, legumes cover crops need nitrogen to grow. They can take it from soil if present enough in forms they can use. Legume roots also seek out specific strains of soil- dwelling bacteria that can fix nitrogen gas from the air for use by the plant. While many kinds of bacteria compete for space on legume roots, the root tissues will only begin this symbiotic N-fixing process when they encounter a specific species of Rhizobium bacteria.
The nitrogen fixation bacteria as a simple model for expressing rela- tionship between above- and below- ground bio-diversity
Plants of the family Leguminoseae play many roles in agriculture, but perhaps most important is their ability to use free nitrogen gas (N 2 ) in the atmosphere as a source of nitrogen. Only certain prokaryotes possess the nitrogenase enzyme required to convert N 2 to ammonia (NH 3 ), a process called nitrogen fixation. Legumes fix atmosphere N by establishing a functional relationship (symbiotic) with a group of soil bacteria collectively called rhizobia. The life cycle of the rhizobia has been intensively studied. It is now understood that a particular strain of Rhizobium in the soil is
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attracted to its particular host. Since the rhizobia are motile, they actually swim to their host. Once they reach the hosts root system they attach to single root hair and release substances that stimulate the hair to allow the Rhizobium to penetrate it. The Rhizobium proceeds to invade certain cells in the root where they produce chemicals that stimulate the growth of these cells to produce the tumor-like nodule (Hurlbert, 1999). Nitrogen gas (N 2 ) from air in the spaces between soil particles enters the nodule. The bacteria contribute an enzyme that helps convert the gas to ammonia (NH 3 ). The plant uses this form of N to construct amino acids, the building blocks for protein. In return, the host legume supplies the bacteria with carbohydrates to fuel the N-fixation process. The nitrogen fixed by rhizobia gives benefits to legume cover crops production in two ways: (i) by meeting most of the legume cover crops nitrogen needs and (ii) by enriching the soil for the benefit of subsequent crops. The rate of N fixation is determined largely by genetic potential of the legume species and by the amount of plant- available N in the soil. Rhizobium inoculation should be considered in all legume green manure crops to gain maximum benefit from nitrogen fixation in the shortest possible time. The fixed nitrogen is subsequently made available to the host plant. When the host plants die, their nitrogen is returned to the soil for use by other organisms.
Inoculants technology for functional relationship induction between above- and below-ground bio-diversity
Although rhizobia seem to be as widely distributed as the legumes themselves, many soils used for legume cultivation do not contain adequate numbers of highly effective rhizobia. They may be devoid of rhizobia, they may contain low numbers of effective strains or they may contain high numbers of ineffective or partially effective strain (Herridge et al. 2002). Allen & Allen (1961) listed four indicator that, if positive, would necessitate inoculation rhizobia for optimum growth of legume i.e. (i) the absence of the same or symbiotically-related legume in the immediate past history of the land, (ii) poor nodulation when the same crop was grown on the land previously, (iii) when the legume followed a non-legume in the rotation, (iv) when the land was undergoing reclamation. Microbial ino- culants have received only limited acceptance by farmers in developing countries. They show considerable promise but more development is required. Inoculants technology is used widely on commercial scale in the development countries, specifically in South East Asia i.e. Thailand, Philippines, Vietnam, and Indonesia. Research is necessary to adapt legume nodulating bacteria technology and develop appropriate Rhizobium strains and ino- culation procedures for use in the tropical area. Current inoculation technology from Indonesian Biotech-nology Research Institute for Estate Crops (IBRIEC), Indonesia, i.e. RhiPhosant have been used in North Sumatera, East J ava and Papua. In these area, legumes are grown under marginal conditions with minimal input and confronted with one or more soil and climatic stresses. Field experiment in Ngawi (East J ava), indicated that by inoculating Rhiphosant to soybean (Glycine max var. Wilis), the yield could increase up to 16.8-48%/ha (Rijono, personal communication).
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In other case, Hatfindo (2000) suggested that the biodiversity of below- ground communities, as well as their functions are strongly influenced by the diversity of above-ground communities. Rapid rates of land-form disturbances followed by land degradation due to mining operations and infrastructure development activities at PT. Freeport Indonesia, in Papua, may result in reduction in soil-biota biodiversity. In addition, alterations of biological regu- lation activities within soil may lead to loss of ecosystem function. Consequently, the ability of the ecosystem to recover and the sustainability of land system may be reduced. Hatfindo have applied inoculant technology of RhiPhosant to identify potential entry points for improving tailings reclamation through the introduction or management of potential soil microorganism and plantation development in tailing areas. The number of nodule of Pterocarpus indicus, Paraserianthes falcataria, and Enterolobium cyclocarpum could increase 38.7, 63.7, and 30.9% respectively by inoculating RhiPhosant to seeds before putting them in the seeder. RhiPhosant (Rhizobial & Phosphate Solubilizing Inoculants) consisting of Bradyrhizobium japonicum a symbiotic N fixation and Aeromonas punctata a phosphate solubilizing bacteria. The commercial inoculants are formulated by growing the bacteria in broth and mixing the broth with ground peat and highly active mineral as a carrier which is stored dry. Application technology is carrier based inoculants. The inoculant that has been formulated with a carrier was mixed with seed just before putting it in the seeder. Development of this inoculants technology was bases on interaction of soil minerals with natural organic and microbes. Peat is the most commonly-used carrier for rhizobial inoculants because of its high moisture-holding capacity and dual abilities to foster multiplication or rhizobia in the peat itself and protect the rhizobia once they are applied to the seed coat, however, it by no means the only carrier tested or used. Brockwell et al. (1995) presented an imposing list of alternative inoculants carriers that included the following: coal, charcoal alone or with composted straw, mixtures of soil and compost, mixtures of soil, peat, composted bark and wheat husks, bagasse, coir dust, composted corn cobs, filter mud, lignite, bentonite and talc. Goenadi (1995) have been determined most suitable carrier material, particularly in the form of clay and organic minerals. The quality of the mixture as carrier was evaluated on the basis of microbial population dynamic. As the results of these, addition of humic substance to minerals up to 2.5% (v/w) yielded a significant increase to the bacterial population at two weeks after inoculation. Keyser et al. (1992) regarded the properties of a good inoculants carrier as: (i) high water holding capacity, (ii) non- toxic to the rhizobia, (iii) easy to sterilise by autoclaving or gamma irradiating, (iv) readily available and inexpensive, (v) sufficiently adhesive for effective application to seed, (vi) pH buffering capacity, and (vii) cation and anion- exchange capacities. Furthermore, the rhizobial strain used in inoculants should have the ability to form nodules and fix N 2 with the target legume, compete in nodule formation with populations of rhizobia already present in the soil, fix N 2 with a wide range of host
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genotypes and across different environments, form nodules and fix N 2 in the presence of soil nitrate, grow in artificial media, in inoculants carrier and in the soil, persist in the soil, particularly for annually regenerating legumes, migrate from the initial site of inoculation, colonize the soil in the absence of the legume host, maintain genetic stability, and be compatible with agrochemicals. They should also have as wider host range as possible, have low mortality on inoculated seed and have the ability to colonize the rhizosphere or the host plant. Strains of rhizobia used in inoculants are selected in strain trials that ideally cover the physical environments and soil types that the inoculants are to cover. This may mean a number of multi-site evaluations over a number of seasons. Legume cover crops inoculants are prone to loss of quality because of variation in the organism and from unforeseen factors affecting some aspect of growth or survival. It is therefore essential that a quality control system be established. The control laboratory maintains and supplies recommended strains annually for ability to fix nitrogen, assess quality of culture during and after manufacture, and conductany research that is necessary to overcome problems associated with production and survival.
Conclusions
Soil organisms as a below-ground bio-diversity are contribute a wide range of essential services to the sustainable function of all ecosystems, such as regulating nutrient cycles and the dynamics of soil organic matter, soil carbon sequestration and greenhouse emission, enhancing the amount and efficiency of nutrient acquisition by the vegetation. Few data are available from Indonesia regions, where it is suspected that the highest level of bio-diversity may be found. Although the bio-diversity of the community of organism below-ground is probably higher in most cases than that above-ground, it has generally been ignored in surveys of ecosystem bio- diversity. The process of land conversion and agricultural intensification are significant cause of below-ground biodiversity loss with risks of impact on ecosystem service. Enhancement of below-ground bio- diversity may be accomplished by direct manipulation, such as re-inoculation with indigenous of N 2 -fixing bacteria and other microbes. Agro technology based on relationship between above and below- ground bio-diversity have beneficial effect on development of agriculture. A lack of domestic inoculants production plants also constrains research, development, and production enterprises. Relationship between above and below- ground technology would benefit for increasing economic and political pressure for greater energy efficiency in agriculture, increased recognition by decision makers in funding agencies and in governments of the potential for exploiting below-ground diversity in developing country. With the advent of modern biotechnology, there is potential to develop crops suited to diverse agro- ecological conditions. By using the case study of functional relationship between above and below-ground biodiversity, this paper examines to extent to which smallholder access to modern biotechnology innovations.
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