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2.4. RNA extraction, RT-PCR, cloning and sequencing of subolesin
gene
Total RNA was isolated from adults of tick reference colonies
and different eld strains using Trizol (Life Technologies, Carls-
bad, CA, USA). Reverse transcription was performed using the rst
strand cDNA synthesis kit (Thermo Scientic, USA). PCR amplica-
tion of the subolesin gene was standardized using different primer
sets designed from the conserved regions of subolesin orthologs
in different tick species [14]. The PCR products were cloned using
the InsTAclone
TM
PCR cloning Kit (Thermo Scientic, USA) and PCR
positive clones were sequenced. The internal primer set (HSF and
HSR; Supplementary Table S1) was designed fromthe rst identi-
ed H. anatolicumsubolesin ortholog sequence and used to identify
PCR-positive clones. At least three different clones from each PCR
product were sequenced to rule out any sequencing errors.
Supplementary Table S1 can be found, in the online version, at
http://dx.doi.org/10.1016/j.vaccine.2014.04.053.
2.5. Sequence analysis
Nucleotide sequence alignment was performed using BLAST
(NCBI). All nucleotide and their deduced amino acid sequences
were analyzed using the program MegAlign (DNAstar, USA). The
deduced amino acid sequences were used to search for orthologs in
the non-redundant GenBank protein sequence database by BLASTP
analysis. The retrieved sequences of hard ticks and dipteran were
alignedusing ClustalWandthe phylogenetic tree constructedusing
the neighbor-joining method in Mega4 package [23]. Dipteran
sequences were used as outgroups. Gaps were treated as pairwise
deletions and amino acid distances were calculated using the Pois-
son model and branch supports were estimated using bootstraps
analysis (10,000 bootstraps).
2.6. Expression of recombinant SUB
The predicted mature protein coding sequence for SUB was
expressed in Escherichia coli BL21(DE3) pLysS (Novagen, USA)
using the expression vector pET32(a) (Novagen). For unidirectional
cloning, forward primer RmS-F and reverse primers RmS-R were
designed having restriction sites for EcoRI and HindIII at forward
and reverse primer, respectively. The PCRproducts were subcloned
into the pET32(a) vector digested with EcoRI and HindIII. Recombi-
nant plasmids were used to transform E. coli-Novablue (Novagen)
and positive clones were selected by PCR. The plasmid of positive
clones was isolated and transformed into E. coli BL21(DE3) pLysS.
For expression, 10 transformed colonies were grown individually
at 37
C for 1h,
sonicated and centrifuged. The supernatants were mixed with Ni-
NTA resin (Qiagen, Germany), loaded into small plastic columns
and the recombinant SUB (rBmSu) was eluted, dialyzed and con-
centrated using cut-off device (Pall lter, UK) and stored at 20
C
in the presence of a protease inhibitor cocktail.
2.7. Western blot
The extracts from partially fed adults of R. (B.) microplus was
prepared as described previously [24]. Rabbits were immunized by
subcutaneous injection of 1mg (total dose) of tick extracts emul-
sied with Freunds complete adjuvant (Pierce, USA) followed by
two booster doses 2 weeks apart by the same route using Freunds
incomplete adjuvant (Pierce). Rabbits were bled directly from the
heart 1 week after the last immunization and sera were isolated
and stored at 20
C.
For Westernblot analysis, therBmSuwas resolvedbySDS-PAGE,
transferred to the PVDF membrane and probed sequentially with
hyperimmune rabbit sera raised against tick extracts, secondary
antibodies and chromogenic substance, DAB (diaminobenzidine).
The reaction was stopped by washing the membrane strips in dis-
tilled water.
2.8. Immunization trial
Ten animals, aged 68 months were divided randomly into two
groups comprising six animals in group 1 and four animals in group
2. The rBmSu was emulsied thoroughly with equal volume of 10%
Montanide 888 in mineral oil. The nal concentration of rBmSu in
vaccine preparation was maintained at 50g/ml. The immuniza-
tions werecarriedout ingroup1animals with2ml (100g)/animal
by deep intramuscular inoculation in the glutial muscle and neck at
0, 30 and 60 days. Group 2 animals were considered as controls and
inoculated with sterile PBS in 10% Montanide 888 in mineral oil. All
the animals were checkedregularly for any signs of local reactionor
clinical abnormalities post immunization. Blood samples were col-
lected from each animal before rst immunization and at 15 days
3490 M. Shakya et al. / Vaccine 32 (2014) 34883494
Fig. 1. PCR amplication and analysis of subolesin gene. (A and B) Subolesin ortholog of Hyalomma anatolicum (474bp) and Rhipicephalus (Boophilus) microplus (486bp),
respectively. 100bp plus DNA ladder from Thermo Scientic (USA). (C and D) Alignment of deduce amino acid sequences of subolesin gene of different isolates of R. (B.)
microplus and H. anatolicum, respectively. The amino acid substitution fromdeduce amino acid sequences are highlighted. (E) Neighbor-joining analysis of tick and dipterans
Subolesin proteins. The evolutionary distances were computed using the Poisson correction method. Branch support value (10,000 bootstraps) for nodes are indicated.
intervals after primary immunization till day 120 and the serum
samples were collected and stored at 20
C.
2.9. Characterization of the antibody response in immunized
animals
The three variables i.e., concentration of antigen, dilution of
primary and secondary antibodies were optimized employing the
checkerboard method [25]. The optimized conditions included
antigen concentration for coating, 2g/ml, dilution of sera 1:200
for IgG, 1:400 for IgG1 and 1:800 for IgG2, dilution of sec-
ondary antibodies 1:2000 for IgG, 1:8000 for IgG1 and 1:12000
for IgG2. Microtiter plates were coated with 100l antigen/well
overnight and the wells were blocked using 5% skimmed milk.
Pre-immunization cattle sera were used as negative controls.
Each diluted serum was added in triplicate wells, incubated at
37
NTV
NTC
,
where, NTV is the number of adult female ticks dropped fromvac-
cinated group and NTC is the number of adult female ticks dropped
fromthe control group.
Effect ontickweight (DW) = 100
WTV
WTC
where WTV is the average adult female tick weight in the vacci-
nated group and WTC is the average adult female tick weight in the
control group.
Effect onoviposition(DO) = 100
PATV
PATC
PPLOV
PPLOC