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Proline Derivatives and Analogs New Amino Acid Building Blocks New Guanidinylation Reagents New Monoprotected Bifunctional Linkers Functionalized Polyethylene Glycols Fluorescent Labeling of Peptides
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Introduction
Sigma-Aldrich is a leading supplier of products for peptide and peptidomimetic synthesis. The increasing relevance of the design of peptidomimetics and peptide analogs in the pharmaceutical industry prompted us to establish a really unique and comprehensive portfolio of unnatural amino acids that can be utilized as building blocks, conformational constraints, molecular scaffolds, or pharmacologically active compounds, giving access to a nearly infinite array of diverse structural elements for the development of new therapeutic drugs. Sigma-Aldrich is pleased to introduce more than 60 recent additions to the portfolio of unnatural amino acid derivatives, building blocks, and selected polyethylene glycols (PEGs) in this ChemFiles. At Sigma-Aldrich we are committed to being your preferred supplier of building blocks and tools for drug discovery. Our broad range of high-quality products, superior distribution facilities, user-friendly ordering systems, and vast chemical knowledge make us the ideal source for all of your research and development needs in this area. A strong example of our commitment is the introduction of several hundreds new products every year. Please visit sigmaaldrich.com/new for regular updates of the latest Sigma-Aldrich products. If you cannot find a building block, or any other product you are looking for, we welcome your input and will use it to broaden our product range even further. Please contact us at hkohlbau@europe.sial.com with your suggestions!
Introduction
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Table 1. Proline Analog or Homolog Structures for the Restriction of the Xaa-Pro Imide Conformation Chapter 1.4 Structure
CH3 N H O
OH
1.4
O N H OH
1.5
HO OH N H O
trans-4-hydroxy-L-proline (2S,4R)-4-hydroxypyrrolidine-2-carboxylic acid cis-4-hydroxy-L-proline (2S,4S)-4-hydroxypyrrolidine-2-carboxylic acid trans-3-hydroxy-L-proline (2S,3R)-3-hydroxypyrrolidine-2-carboxylic acid cis-3-hydroxy-L-proline (2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid trans-4-amino-L-proline (2S,4R)-4-aminopyrrolidine-2-carboxylic acid 3,4-dehydro-DL-proline ()-3-pyrrolin-2-carboxylic acid (2S)-aziridine-2-carboxylic acid
1.5
HO OH N H O
OH OH N H O
OH OH N H O
1.5
1.5
1.6
H2N OH N H O OH N H O O OH N H
1.7
1.8
1.8
N H
O OH
(2S)-azetidine-2-carboxylic acid
L-pipecolic
1.9
N H OH O OH O S N H O
1.10
O N H
1.10
OH
1.10
S N H O
OH
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-Methyl-proline is a bioactive molecule restoring normal levels of bone collagen type I synthesis.27 It can be looked at as a conformationally constrained aminoisobutyric acid analog. The -Methyl-proline residue has been inserted into morphiceptin to perform conformational studies on the bioactivity of the Xaa-Pro cis-/trans-isomers.28 A -methyl-proline containing potential dual 41 integrin antagonist has been described recently.29 -Benzyl-proline combines the conformational restrictions of a proline derivative with the electronic properties of phenylalanine. Spirolactams containing an -benzyl-proline substructure have been synthesized as potential beta-turn mimetics.30
References
(1) (2) (3) (4) (5) (6) (7) (8) (9) Brandl, C. J.; Deber, C. M. Proc. Natl. Acad. Sci. USA 1986, 83, 917. Ramachandran, G. N.; Sasisekharan, V. Adv. Prot. Chem. 1968, 23, 283. Steward, D. E.; Sarkar, A; Wampler, J. E. J. Mol. Biol. 1990, 254, 353. Weiss, M. S.; Jabs, A.; Hilgenfeld, R. Nature Struct. Biol. 1998, 5, 676. Schmid, F. X. Annu. Rev. Biophys. Biomol. Struct. 1993, 22,123. Schmid, F. X. et al. Adv. Prot. Chem. 1993, 44, 25. Fischer G. et al. Biomed. Biochem. Acta 1984, 43, 4401. Fischer G. et al. Nature (London) 1987, 329, 268. Kern, D.; Schutkowski, M.; Drakenberg, T. J. Am. Chem. Soc. 1997, 119, 8403. (15) Wagner, I.; Musso, H. Angew. Chem., Int. Ed. Engl. 1983, 22, 816. (16) Metzner, L. et al. JPET, 2004, 309, 28. (17) Goodmann, M.; Niu, G. C.; Su, K. J. J. Am. Chem. Soc. 1970, 92, 5219. (18) Goodman, M.; Chen, V.; Benedetti, E.; Perdone, C.; Corradini, P. Biopolymers 1972, 11, 1779. (19) Shuman, R. T.; Rothenberger, R. B.; Campbell, C. S.; Smith, G. F.; Giffordmoore, D. S.; Paschal, J. W.; Gesellchen, P. D. J. Med. Chem. 1995, 38, 4446. (20) Wnsch, E. et al. Int. J. Pept. Protein Res. 1990, 36, 401. (21) Wnsch, E. et al. Int. J. Pept. Protein Res. 1990, 36, 418. (22) Rahfeld, J.; Schutkowsky, M.; Faust, J.; Neubert, K.; Barth, A.; Heins, J. Biol. Chem. Hoppe-Seyler 1991, 372, 313. (23) Samanen, J.; Cash, T.; Narindray, D.; Brandeis, E.; Adams, W.; Weidemann, H.; Yellin, T.; Regoli, D. J. Med. Chem. 1991, 34, 3036. (24) Kiso, Y. Biopolymers 1996, 40, 235. (25) Karanewsky, D. S.; Badia, M. C.; Cushman, D. W.; DeForrest, J. M.; Dejneka, T.; Lee, V. G.; Loots, M. J.; Petrillo, E. W. J. Med. Chem. 1990, 33, 1459. (26) Einbond, A.; Sudol, M. FEBS Lett. 1996, 384, 1. (27) Lubec, G. Life Sci. 1995, 57, 2245. (28) Nelson, R. D. et al. NIDA Research Monograph 1986, 101. (29) Chang, L. L. et al. Bioorg. Med. Chem. Lett. 2002, 12, 159. (30) Alonso, E. et al. J. Org. Chem. 2001, 66, 6333.
(10) Bader, R. F. W.; Cheeseman, J. R.; Laidig, K. E.; Wiberg, K. B.; Breneman, C. J. Am. Chem. Soc. 1990, 112, 6530. (11) Yamazaki, T.; Ro, S.; Goodman, M.; Chung, N. N.; Schiller, P. W. J. Med. Chem. 1993, 36, 708. (12) Yu, W. F.; Tung, C. S.; Wang, H.; Tasayco, M. L. Protein Sci. 2000, 9, 20. (13) Olsen, B. R.; Ninomiya, Y. In Guidebook to the Extracellular Matrix and Adhesion Proteins; Kreis, T., Vale, R., Eds; Oxford University Press: Oxford, 1993; p 40.
s i g m a - a l d r i c h . c o m
(14) Mauger, A.B., In Chemistry and Biochemistry of Amino Acids, Peptide and Proteins; Weinstein, B., Ed.; Marcel Dekker: New York, 1977; p 179.
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OH N Boc O
OH N Z O
15.40100 mg 36.90500 mg
OH N Boc O
OH N Ddz O
26.901 g 89.805 g
49.501 g 195.005 g
O N Boc O N O O
O N OH O S O
H 3C
CH3
87778-250MG-F 87778-1G-F
42.60250 mg 116.001 g
OH N Fmoc O
OH N H O
F O N Fmoc O F
F F F
OH N H O
OH N Fmoc O
OH N H O
OH N Z O
OH N H O
21.7010 g 89.6050 g
81720-5G 81720-25G
29.405 g 116.5025 g
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1.3 3- Homoprolines
Boc-3-Homopro-OH purum, 98.0% TLC C11H19NO4 MW: 229.27 [56502-01-3]
14982-250MG 14982-1G
O N Boc OH
L-3-Homopro-OH HCl purum, 98.0% TLC C6H11NO2 HCl MW: 165.62 [53912-85-9]
03768-250MG 03768-1G
O N H OH HCl
82.00250 mg 229.501 g
124.50250 mg 366.001 g
O N Fmoc OH
47912-250MG 47912-1G
89.50250 mg 254.501 g
(R)--Allyl-proline hydrochloride purum, 98.0% HPLC C8H13NO2 HCl MW: 191.66 [177206-69-8]
06541-500MG-F
8
OH N H HCl O
167.50500 mg
245.00500 mg
8
OH N H HCl O
CH3 N H
OH
115.00250 mg 321.501 g
245.00500 mg
CH3 O N Boc OH
O OH
167.50500 mg 52969-500MG
CH2 O N Boc OH
167.50500 mg
8
167.50500 mg
8
OH N Boc O
47079-500MG-F
OH N Boc O
245.00500 mg
8
245.00500 mg
8
OH N Boc O
OH N Boc O
76896-500MG-F
245.00500 mg
06486-500MG-F
245.00500 mg
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O OH
H3C
OH N Boc O
90682-500MG
167.50500 mg 76501-500MG
Cl
167.50500 mg
O N Boc OH
167.50500 mg 36748-500MG
O OH Cl
OH N O Boc
167.50500 mg
90684-500MG
167.50500 mg
OH
30763-500MG
Br
167.50500 mg
8
CF3
O N Boc OH
94866-500MG
167.50500 mg 42004-500MG-F
F
OH N Boc O
245.00500 mg
8
CF3
OH N Boc O
74082-500MG
167.50500 mg
8
F
OH N Boc O
05199-500MG-F
245.00500 mg
8
OH N Boc O
67420-500MG-F
245.00500 mg
8
F
OH N Boc O
39793-500MG-F
245.00500 mg
8
OH N Boc O
CF3 OH O
14931-500MG-F
190.00500 mg 39166-500MG-F
190.00500 mg
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HO O N H OH
51.205 g 170.5025 g
O OH N Boc O
HO OH N Boc O
90.501 g 317.005 g
Fmoc-Hyp-OH purum, 98.0% HPLC, sum of enantiomers C20H19NO5 HO MW: 353.37 [88050-17-3]
47686-1G
HO O N H OH
O N OH Fmoc
20.101 g
t-Bu O O N OH Fmoc
HO O N H OH
35.50250 mg 104.501 g
OH O N H OH
HO OH N Z O
41.60100 mg 138.50500 mg
41.605 g 138.5025 g
OH O OH
56245-10MG
HO O N OH O CH3
212.0010 mg
77.1010 g 257.0050 g
P0868
s i g m a - a l d r i c h . c o m
Building on the success of their Source Book of Enzymes, the authors have assembled a catalog of over 26,000 commercially available proteins, peptides, and amino acids. All are arranged alphabetically and by sequence for fast access, and are replete with technical details and vendor information. Compounds can be easily located by either directly searching the appropriate section by chemical name or by consulting the general index by name, synonym, or derivative formula. The data covers sequence, sequence modification, chemical derivatives, preparation form, purity, composition, activity, functionality, as well as applications and literature references. Please visit sigma-aldrich.com/books for a complete list of over 1700 titles, tables of contents, or to order online.
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OH
534404-1G
92.001 g 40372-500MG-F
Fmoc NH OH N Boc O
N Boc
340.00500 mg
8
534390-1G
179.001 g
8
N Boc O
OH
01336-500MG-F
340.00500 mg
OH N Boc O
38455-500MG-F
340.00500 mg
1.7 Dehydroprolines
3,4-Dehydro-DL-proline 99.0% T C5H7NO2 [3395-35-5]
30900-250MG 30900-1G
O N H OH
O N H OH
286.00250 mg 867.901 g
38.1010 mg 127.1050 mg
O N Boc OH
11558-50MG 11558-250MG
L-Azetidine-2-carboxylic
93.60 50 mg 312.00250 mg
57.80500 mg
C4H7NO2 [2133-34-8]
11542-500MG 11542-2.5G
O OH
57.80500 mg
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10
N H
OH O
N Boc O
OH
80618-25G 80618-100G
L-Pipecolic acid puriss., 99.0% NT C6H11NO2 [3105-95-1]
55.0025 g 181.00100 g
62.10250 mg 182.501 g
N H
OH O
N Fmoc
OH O
80615-100MG 80615-500MG
D-Pipecolic acid puriss., 99.0% NT C6H11NO2 [1723-00-8]
62.20100 mg 264.50500 mg
85.00250 mg 229.501 g
N H
OH O
N Fmoc
O OH
80617-100MG 80617-500MG
86.20100 mg 366.50500 mg
62.10250 mg 182.501 g
N Boc O
OH
145.501 g 485.505 g
OH
37.201 g 123.005 g
95471-1G-F 95471-5G-F
19.401 g 64.805 g
O N Z O
OH
OH
43.101 g 142.505 g
94703-1G-F 94703-5G-F
25.401 g 100.505 g
S N H O
OH
14.201 g 46.505 g
75951-1G 75951-5G
19.701 g 65.605 g
OH O NH S
s i g m a - a l d r i c h . c o m
88400-10G 88400-50G
16.2010 g 54.0050 g
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11
OH N H
OH N Z
81745-1ML 81745-5ML
D-Prolinol
23.40 1 mL 78.005 mL
66.101 g
C5H11NO [68832-13-3]
81744-1ML 81744-5ML
52.501 mL 223.50 5 mL
68890-1ML 68890-5ML
107.001 mL 455.005 mL
OH N Boc
OH
40.201 g 134.005 g
13839-5G-F 13839-25G-F
39.705 g 158.5025 g
OH N Boc
HO OH N Boc
40.601 g 546992-1G
OH N Fmoc
102.001 g
HO OH N Z
104.001 g
8
O OH
8
O H Fmoc N OH
36314-1G-F
122.001 g
8
O H Boc N OH
29294-1G-F
95.001 g
8
O H Fmoc N OH
29293-1G-F
135.001 g
28319-1G-F
130.001 g
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12
In addition to our portfolio of free alanine and cysteine derivatives, N-Boc and N-Fmoc-protected derivatives of 3-pyrazolyl-alanine and 3-triazolyl-alanine are now available to Sigma-Aldrich customers worldwide under this collaboration.
8
H N O OH
H3C
H3C
CH3 O H N N N
06993-1G-F
OH
67387-500MG-F
144.00500 mg
8
21682-1G-F
201.501 g
O Fmoc NH H N N
OH
CH3
51916-500MG-F
158.00500 mg
79256-1G-F 79256-5G-F
78.401 g 313.505 g
12227-1G-F
201.501 g
8
O Fmoc NH H N N N
78904-1G-F
134.501 g
OH
134.501 g
s i g m a - a l d r i c h . c o m
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13
8
SO3H
CF3
16599-1G-F
140.001 g
8
O OH
CF3
CH3 O H HO
53636-500MG-F
115.00500 mg
8
CH3 O NH O OH
16726-1G-F 16726-5G-F
36.401 g 145.505 g
8
O H3C H 3C CH3 O O H N H HO O
OCH3
95029-1G-F 95029-5G-F
41.601 g 166.505 g
8
H 3C H3C O H N O O
55894-500MG-F
185.00500 mg
8
CH3 O NH O OH
CH3 O H O O S O CH3
OCH3
04106-1G-F 04106-5G-F
83.201 g 333.005 g
8
O OH
52169-500MG-F
L-Isoserine
185.00 500 mg
8
O HO H H2N OH
C3H7NO3 [632-13-3]
H N O H
S Ph
Ph Ph
06054-1G-F
L--Neopentylglycine
143.001 g
8
O OH
C7H15NO2 [57224-50-7]
08503-1G-F 08503-5G-F
30.201 g 119.505 g
8
O OH
73489-1G-F 73489-5G-F
L-Serine
115.001 g 460.005 g
8
H N O H
O O
CH3
H3C CH3
07697-1G-F 07697-5G-F
SO3H
46.801 g 187.005 g
04934-5G-F 04934-25G-F
39.505 g 156.0025 g
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14
8
O OH CH3 CH3
8
O H N O H HN O OH
16905-1G-F
225.501 g
8
H3C H3C O H N O OH O O
39398-5G-F 39398-25G-F
44.905 g 190.5025 g
8
H3C H 3C O H N O OH
CH3 O H
CH2
CH3 O H
72814-5G-F 72814-25G-F
44.905 g 190.5025 g
8
O H N O H O OH CH3 HN
O H 2C
78539-1G-F 78539-5G-F
16.501 g 56.105 g
8
H3C H3C O H N O OH
CH3 O H O S H3C O
49874-1G-F 49874-5G-F
33.701 g 134.505 g
s i g m a - a l d r i c h . c o m
N N H
O O t-Bu
84190-1G-F 84190-5G-F
141.001 g 598.005 g
84656-500MG-F
183.50500 mg
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15
8
CH3 O N H Br
8
O N H Br
90303-500MG-F 90303-2.5G-F
56.30500 mg 187.502.5 g
8
74291-1G-F 74291-5G-F
29.101 g 116.505 g
8
O N H Br
Br
89171-500MG-F 89171-2.5G-F
46.90500 mg 199.502.5 g
76061-1G-F 76061-5G-F
47.801 g 191.505 g
8
O N H Br
73431-1G-F 73431-5G-F
47.801 g 191.505 g
8
O N H NH2 HCl
NH2
51036-1G-F 51036-5G-F
56.101 g 238.50 5 g
8
O O N H HCl H
44911-1G-F 44911-5G-F
51.001 g 204.005 g
8
HCl NH2
43303-1G-F 43303-5G-F
56.101 g 224.505 g
8
O O N H HCl NH2
69285-1G-F 69285-5G-F
56.101 g 224.505 g
04667-1G-F 04667-5G-F
57.201 g 229.005 g
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16
References
(1) (2) (3) (4) (5) (6) (7) Mehvar, R. Pharm. Pharmaceut. Sci. 2000, 3, 125. Wang-Yi, L. J.Biochem. Cell Biology 2002, 34, 396. Levy, J. et al. J. Pediatr. 1988, 113, 312. Inada, Y. et al. TIBTECH, 1995, 13, 86. Harris, J. M.; Martin, N. E.; Madi, M. Clin. Pharmacokinet. 2001, 40, 539. Nakamura, A. et al. J. Biol. Chem. 1986, 261, 16792. Zalipski, S. et al. In Peptides: Structure and Function; Deber, C. M., Hruby, V. J., Kopple, K. H., Eds.; Pierce Chemical Co: Rockford, 1985; p 257. Seitz, O.; Kunz, H. J. Org. Chem. 1997, 62, 813. Mutter, M.; Bayer, E. Angew. Chemie 1974, 86, 101. (11) Gravert, D. J.; Janda, K. D. Chem. Rev. 1997, 97, 489. (12) Koskinen, A. M. P. et al. Bioorg. Med. Chem. Lett. 1995, 5, 573. (13) Cordes, A.; Kula, M.-R. J. Chromat. 1986, 376, 375. (14) Harris, J. M. et al. J. Polym. Sci. Polym. Chem. Ed. 1984, 22, 341. (15) Andreadis, J. D.; Chrisey, L. A. Nucleic Acids Res. 2000, 28 (2), e5. (16) Zalipski, S.; Barany, G. J. Bioact. Compatible Polym. 1990, 5, 227. (17) Urrutigoity, M.; Souppe, J. Biocatalysis 1989, 2, 145. (18) Okada, H.; Urabe, I. Meth. Enzymol. 1987, 136, 34.
(8) (9)
s i g m a - a l d r i c h . c o m
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17
O O O OH
44.50 50 mL 186.50250 mL
O O t-Bu
92.901 g 371.505 g
8
O O O H 12
61.201 g 260.005 g
08453-500MG-F
182.00500 mg
HO
H 12
NH2 6
159.001 g 530.005 g
8
O OCH3 7
70023-500MG-F
229.50500 mg
O 8
NH2
188.501 g 79141-500MG-F
8
O OCH3 11
229.50500 mg
O 10
132.50500 mg
8
NH2
77090-500MG-F
229.50500 mg
NH2
O 5
06703-1G-F
188.501 g
8
NH2
76172-500MG-F
179.50500 mg
OH O
O 7
94704-1G-F
188.501 g 76318-500MG-F
NH2
179.50500 mg
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18
O 9
O OH
77787-500MG-F
179.50500 mg
79898-500MG-F
336.00500 mg
O OH
O O
O OH
79632-500MG-F
336.00500 mg
78691-500MG-F
238.50500 mg
O OH
O NH O
O OH
76708-500MG-F
336.00500 mg
71613-500MG-F
238.50500 mg
O OH
14501-250MG 14501-1G
63.90250 mg 188.001 g
81324-250ML 81324-1L
57.20250 mL 200.501 L
14502-250MG 14502-1G
63.90250 mg 188.001 g
14565-250MG 14565-1G
63.90250 mg 188.001 g
14504-250MG-F 14504-1G-F
63.90250 mg 188.001 g
14567-250MG
62.20250 mg
14508-250MG 14508-1G
58.00250 mg 188.001 g
14571-250MG
62.20250 mg
s i g m a - a l d r i c h . c o m
14509-250MG-F 14509-1G-F
59.20250 mg 191.501 g
14573-250MG
62.20250 mg
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19
O H3C S
O O O SO2CH3 n
14551-250MG 14551-1G
54.30250 mg 159.501 g
17896-1G 17896-5G
31.101 g 122.505 g
OO S H3C O
SO2CH3 n
17891-1G 17891-5G
07964-250MG 07964-1G
63.90250 mg 188.001 g
07966-250MG 07966-1G
78.20250 mg 253.501 g
06676-250MG 06676-1G
68.90250 mg 202.501 g
17928-1G-F 17928-5G-F
67.301 g 224.505 g
07969-250MG 07969-1G
94.50250 mg 278.001 g
17929-1G-F 17929-5G-F
85.101 g 336.505 g
8
HO O O O CH3 n
92192-1G-F 92192-5G-F
83.401 g 330.005 g
06679-1G 06679-5G
39.701 g 132.505 g
CH3 n
07965-250MG 07965-1G
78.20250 mg 274.001 g
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20
O O O CH3 n
21954-250MG 21954-1G
50.00250 mg 141.501 g
63187-1G 63187-5G
82.701 g 351.505 g
11124-250MG-F 11124-1G-F
59.10250 mg 203.001 g
17894-1G 17894-5G
53.30250 mg 186.501 g
17893-1G 17893-5G
36.201 g 143.005 g
CH3 n
54369-250MG-F 54369-1G-F
30.70250 mg 107.901 g
41214-250MG-F 41214-1G-F
59.10250 mg 202.201 g
CH3 n
41964-250MG-F 41964-1G-F
30.70250 mg 107.901 g
49543-250MG-F 49543-1G-F
100.00250 mg 350.001 g
O O O t-Bu
17359-1G-F
Br
185.501 g
96823-1G-F 96823-5G-F
s i g m a - a l d r i c h . c o m
93.601 g 374.505 g
To order: Contact your local Sigma-Aldrich office (see back cover), or visit sigma-aldrich.com.
US $
21
To discuss how our expertise can benefit your next scale-up project or to obtain a quote, contact your local Sigma-Aldrich office or visit www.safcglobal.com
22
Name Atto 565-Streptavidin Atto 590-Streptavidin Atto 610-Streptavidin Atto 655-Streptavidin Atto 680-Streptavidin Streptavidin-C-Phycocyanin Streptavidin C-Phycoerythrin
Table 3. Quenchers Cat. No. 09278-25MG-F 09278-100MG-F 42220-500MG 61683-1MG-F 44756-1MG-F 53988-1MG-F Name DABCYL-N-succinimidylester 3,5-Dinitrophenyl isocyanate Atto 540 Q NHS ester Atto 580 Q NHS ester Atto 612 Q NHS ester Absorption Max. 453 348 540 580 612 Package Size 25 mg 100 mg 500 mg 1 mg 1 mg 1 mg
References
(1) (2) (3) (4) Kenworthy, A. K. Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy. Methods 2001, 24, 289. Hoppe, A.; Christensen, K.; Swanson, J. A. Imaging protein-protein interactions in living cells. Biophys. J. 2002, 83, 3652. Ozawa, T.; Umezawa, Y. Peptide assemblies in living cells. Methods for detecting protein-protein interactions. Supramol. Chem. 2002, 14, 271. Peled, H.; Shai, Y. Synthetic S-2 and H-5 segments of the Shaker K+ channel: secondary structure, membrane interaction, and assembly within phospholipid membranes. Biochemistry 1994, 33, 7211. Ben-Efraim, I.; Strahilevitz, J.; Bach, D.; Shai, Y. Secondary structure and membrane localization of synthetic segments and a truncated form of the IsK (minK) protein. Biochemistry 1994, 33, 6966. Marm, N.; Knemeyer J. P.; Sauer, M.; Wolfrun, J. Inter- and Intramolecular Fluorescence Quenching of Organic Dyes Tryptophan. Bioconjugate Chem. 2003, 14, 1133. Wieb van der Meer, B.; Coker, G.; Simon, C. Resonance Energy Tranfer: Theory and Data. VCH: New York, 1994. Young, R. M.; Arnette, J. K.; Roess, D. A.; Barisas, B. G. Quantitation of fluorescence energy transfer between cell surface proteins via fluorescence donor photobleaching kinetics. Biophys. J. 1994, 67, 881. Chicester, U. K.; Andrews D. L.; Demidov A. A. Resonance Energy Transfer. Wiley & Sons: New York, 1999. Widengren, J.; Schweinberger, E.; Berger, S.; Seidel, C. A. M. Two new concepts to measure fluorescence resonance energy transfer via fluorescence correlation spectroscopy: theory and experimental realizations. J. Phys. Chem. A 2001, 105, 6851. Clayton, A. H. A.; Hanley, Q. X. Arndt-Jofin D. J.; Subramaniam, V.; Jovin, T. M. Dynamic fluorescence anisotropy imaging microscopy in the frequency domain (rFLIM) Biophys. J. 2002, 83, 1631. Clegg, R. M; Holub, O.; Gohlke, C. Fluorescence lifetime-resolved imaging: measuring lifetimes in an image. Methods Enzymol. 2003, 360, 509. (19) (13) (14) Jares-Erijman, E. A.; Jovin, T. M. FRET imaging. Nat. Biotechnol. 2003, 21, 13871395. Matayoshi, E. D.; Wang, G. T.; Krafft G. A.; Erickson, J. Novel fluorogenic substrates for assaying retroviral proteases by resonance energy transfer. Science 1990, 247, 954. Wang, G. T. Design and Synthesis of New Fluorogenic HIV Protease Substrates Based on Resonance Energy Transfer. Tetrahedron Lett. 1990, 31, 6493. Garcia-Echeverria, C.; Rich, D. H. New intramolecularly quenched fluorogenic peptide substrates for the study of the kinetic specificity of papain. FEBS Lett. 1992, 297, 100. Wang, G. T.; Krafft, G. A. Automated Synthesis of Fluorogenic Protease Substrates: Design of Probes for Alzheimers Disease-Associated Proteases. Bioorg. Med. Chem. Lett. 1992, 2, 1665. Maggiora, L. L.; Smith, C. W.; Zhang, Z. Y. A general method for the preparation of internally quenched fluorogenic protease substrates using solid-phase peptide synthesis. J. Med. Chem. 1992, 35, 3727. Contillo, L. G., et al. General Strategy for the Synthesis of Eosin Fluorescein Energy Transfer Substrates for High Sensitivity Screening of Protease Inhibitors. In Techniques in Protein Chemistry V, Crabb J. W., Ed. Academic Press: New York, 1994; pp 493. Weder, J. K. P; Kaiser, K-P. Fluorogenic Substrates for Hydrolase Detection Following Electrophoresis. J. Chromatogr. A 1995, 698, 181. Cavrois, M.; de Noronah, C.; Greene, W. C. Nat. Biotechnol. 2002, 20, 11511154. Marm, N.; Knemeyer, J. P.; Wolfrun, J.; Sauer, M.; Highly Sensitive Protease Assay Using Fluorescence quenching of Peptide Probes Based on Photoinduced Electron Transfer. Angew. Chem., Int. Ed. Engl. 2004, 43, 3798.
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s i g m a - a l d r i c h . c o m
To order: Contact your local Sigma-Aldrich office (see back cover), or visit sigma-aldrich.com.
rotein-AQUA is a powerful, enabling technology that facilitates focused, quantitative studies of not only specific protein expression, but specific amino acid modification as well. The Protein-AQUA strategy, originally presented in 2003 by Dr. Steve Gygi and his team,1 enables absolute protein quantitation using stable isotope labeled peptides, and mass spectrometry. Protein-AQUA is based on a common principle: the use of a labeled molecule as an internal standard. By applying this technique to protein and peptide analysis, Gygis team has advanced the abilities of protein researchers to study complex biological samples quantitatively, and has provided a valuable new tool for Proteomics! To meet the specific requirements of AQUA experimentation, Sigma has developed a specialized custom peptide offering. 95% peptide purity by reverse-phase HPLC >98 atom % 13C and 98 atom % 15N isotopically labeled amino acid incorporation Confirmed molecular weight by MALDI-TOF mass spectrometry Confirmed peptide content Peptides supplied as trifluoroacetate salts (acetate salt form also available) Phosphorylated amino acids available Available in 15 business days
(1) Gerber, S. A.; Rush, J.; Stemman, O.; Kirschner, M. W.; Gygi, S. P. Proc. Natl. Acad. Sci. U.S.A. (PNAS) 2003, 100, 6940.
To learn more about AQUA Peptides, visit our Web site at: sigma-aldrich.com/aquamethod.
This method was developed by Dr. Steve Gygi and colleagues at Harvard Medical School [Stemmann O, Zou H, Gerber SA, Gygi SP, Kirschner MW; Dual inhibition of sister chromatid separation at metaphase, Cell 2001, Dec 14, 107: 715-726]. Limited use of this method is permitted under a licensing arrangement with Harvard Medical School.
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