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ABSTRACT 31P MMR chemical shifts of the selected mono- and oligonucleotide derivatives, including the compounds with P-N, P-C, P-S bonds and phosphite nucleotide anal3+ues have been presented. The influence of substituents upon chemical shifts has been discussed. The concrete examples of P chemical shifts data application in the field of nucleotide chemistry have been considered.
,
INTRODUCTION 31p NMR spectroscopy is widely used at present in the chemistry of nucleotides. Some important aspects of 31P NMR biological applications e.g. studies of the conformations of nucleotide derivatives, metabolism of the latter in cells and tissues in vivo e.a. have been considered in reviews [1-5].However no attempts have been made to generalize and systematize the information about 31P chemical shifts of nucleotide derivatives. So the investigation carried out in the present work has been connected with the establishment of the tendencies in the changes of 31P chemical shifts of mono- and oligonucleotide derivatives. The considered data are included the typical examples of 31p chemical shifts and seemed to be useful for characterization of different nucleotide derivatives by their 31P NMR spectra [6]. The reactive intermediates and incompletely characterized compounds are indicated in the Tables with a sign (V).
RESULTS
All the compounds have been classified into groups according to the chemical environment of the phosphorus atom (see Tables 1-16). The 31P chemical shifts are referenced to 85% HP04 and
I RL Press Limited, Oxford, England.
5547
Table 1 31P chemical shifts of phosphate monoesters (OH)2P(O)(OR) 6 Medilum Ref Nc 6 0 Medium Ref. R R -bzdA(Ac) 0.6 Py,PyH 6 4 -dT(Ac) 1.2 Py,PyH 17-22 21 6 5 (MeOTr)daT- O .8 2 -andC (Ac ) 0 .7 _,_ __ a) b$ -ibdG(iB) 0.4 1j7 6 pdTp 23
_~ ~ ~
3
-.ppm r. _-.1pp
pdTpdT(Ac) [61. This influence has been established to be less than-1 ppm both for phosphomonoester and phosphodiester group. The lack of correlation connecting 31P chemical shifts with dipole moments or dielectric constants of solvents has been found. Probably these small changes in chemical shifts have been provided by conformational peculiarities of molecules in a concrete solvent [15] The counterion effect can be estimated from the comparison of chemical shifts for pyridinium (0.7 and -1.25ppm) and triethylammonium salt (-0.1 and -2.35ppm) of pdTpdT(Ac) in
pyridine as a solvent [6] All the factors mentioned above determine in more or less degree the values of 31 P chemical shifts of nucleotide derivatives. Therefore the comparison of chemical shifts must be necessary made under identical or at least similar conditions. Phosphate monoesters (PME: mononucleotides and terminal phosphates of oligonucleotides, Table 1). The signals 31P of NE groups in pyridine solutions are observed in 1.2+0.lppm interval depending on the nature of base and phosphate group position (3' or 5'); in DMF solutions from -0.1 to -1.Oppm (compound
Phosphate diesters (PDE: monoesters of terminal phosphates of mono- and oligonucleotides, internucleotide phosphates, Table 2). The upfield shift of terminal phosphate signal (for nonaqueous solutions) by 1.5+2.6ppm has been observed at the formation of alkyl esters of mono- and oligonucleotides and also of internucleotide bond (except methyl esters indicating rather small upfield shift: 0.1+0.3ppm, cp. chemical shifts of the compound 1.4 with those of 2.2 and2.8). In the case of trichloro)THe rirst position or trie number or compound corresponds to the number of the Table; the second after the point to the number of compound in that Table.
5549
1.6 *).
31
Table 2
Medium
iv 2 3V
4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Py,PyH
H 0,pH7
-It_,,_
-,,-
Py
Ref. 17
25, 29
-5.1 -6.0 -0.94 -1 . 2*) -1.0 -dT(Ac) -0.85 -U(Ac)2 -2.05 -CNEt -2.01 -CH CCl -3.64
30
6 6
Pi,PyH+ _,,_
-",
-,-",
23 18,29 31 32
32
U(St)_
A(3')dA-
4-HPh-U -A -dA
Poly(U)
32 33 6 6 6
7 7 8 8
H20,pH7
_,, -,-,,_
*)-2.5ppm in DMF,PyH+ [231 **).-1 .2ppm (for 5'-cyan othylphosphate ester group) ethyl esters the 31p chemical shift change has been found to be -4ppm (cp. chemical shifts of compounds 1.5 and 2.12). The signals of mononucleotide phenyl esters (compounds 2.32.5) in comparison with alkyl ones (except methyl and trichloroethyl esters) have been observed to be shifted upfield (4-5 ppm). The presence of substituents in phenyl ring leads to substantial changes in the chemical shifts (cp. chemical shifts of compounds 2.3-2.5). The nature of heterocyclic bases and substituents in hydroxy and amino groups has been found to affect the chemical shifts in PDE. E.g. the chemical shifts of 2-cyanoethyl esters of pandC(-1.3ppm[24]), pbzdA(-1.5ppm[24]), pdTE1.3ppm [24]), pdT(Ac) (-1.4ppm[25]) are noticeable different. The individual 31p signals of internucleotide phosphates of oligonucleotides dCpdTpd ApdG[26], dTpdTpdGpdG[27], dCpdCpdApdA[27] pUpUpU[6], dApdTpdGpd CpdApdT[28]and pdGpdCpdGpdCpdGpdC1281have been also observed. The reliableassignments of 31p signals have been performed only in works126,271.
5550
31p
N0 1 2 3 4 5
Et7 (Tr)dTPh8 (Tr)dT9 4-ClPh(Tr)dT10 Ph(Tr)dT11 PhSC H (Tr)dT12 MeOTr)U(2'-Ac)-, CH Cf 1 MeOTr)U(21-Ac)-|CI 2CC13
R1CN-EtCNEtCNEtPh(Tr)dT(Tr)dT-
R Cd ' CNEt- -dT(Ac) 4-ClPh- -dT(Ac) Ph- -dT(Ac) CNEt- -dT(Ac) Me- -dT(Ac)
GIVE
RO
*) * Py CH2C12 py PY PY By
29 29 29 31 6 6 29 30 36 37 32 6
Py1351
Phosphate triesters (PTE: diesters of mononucleotides and terminal phosphates of oligonucleotides, esters of internucleotide phosphates, Table 3). The signals of phosphorus atoms in alkyl PTE has been shifted upfield (0.9+1.8ppm) in respect to alkyl PDE, except methyl PTE (shift is near zero) and of trichloroethyl PTE (1.8+2.4ppm upfield). The signals of monophenyl PTE have been shifted upfield (4-5ppm) in respect to alkyl PTE (cp. chemical shifts of compounds 3.5 and 3.8) and diphenyl ones (compound 3.10) have been shifted to c.a. l0ppm,i.e. the additivity of substituents effect is observed. The internucleotide phosphate esterification leads to diastereomers formation. The individual signals of the latter are often observed in 31p NMR spectra (e.g. compounds 3.3,3.5-3.9,3.11-3.13). For oligonucleotide derivatives the formation of diastereomers is typical for any substitutions at internucleotide phosphorus (see below). The chemical shifts difference of PTE diastereomers i&fd2-d can reach 0.4ppm (compound 3.8). The change of medium and solvents has practically no influence on the phosphorus chemical shifts of PTE. E.g. the chemical shifts for compound 3.9 in pyridine and methylene chloride differs on 0.lppm. Monoamides of Phosphate monoesters (PME monoamides: amides of mononucleotides and terminal phosphates of oligonucleotides, Table 4). PME monoamides obtained with primary (secondary) ami5551
R2
dT-dT -dT -dT -dT -dT -dT(Ac) -dT
Medium
Ref.
H2NH NC" H
EH
10 11
imi'daiole-
triazolsPy-
DMAP+*)
-dT(Ac) -dT(Ac)
-dT(Ac)
_,,_
38 38 39 39 39 39 40 39
-,,_ _,,_
17,18,20,22 41
*) 4-N
NLdimethylaminopyridine
nes can be considered as PDE analogues esteric oxygen being substituted by NH(or NR) group. In comparison with PDE the downfield chemical shifts of phosphorus atom in these compounds are observed (by 6-7ppm; cp. chemical shifts of compounds 2.2 and 4.7, 2.3 and 4.6). The substitution of alkyl group at nitrogen by phenyl one leads as in PDE case to upfield shift of 31p signal (5-6ppm; cp. chemical shifts of compounds 4.3 and
4.6).
The introduction of CH2 group between phenyl and nitrogen should be noticed to destroy the conjugation including phosphorus, nitrogen atoms and i-system of benzene ring. That effect leads to downfield 31p chemical shift (cp. chemical shifts of compounds 4.6 and 4.7). The compounds with nitrogen atom of P-N bond being included in aromatic sr-system can be considered as another type of PME monoamides. E.g. imidazolides and triazolides of mononucleotides (compounds 4.8 and 4.9) have 31p signals at -(10-11ppm) region and phosphorus signal of N-phosphorylpyridinium group of mono- and oligonucleotides is observed at -(5-7ppm)(compounds
4.10,4.11). Monoaides of phosphate diesters (PDE monoamides: monoamides of terminal phosphate esters and internucleotide phosphates,
Table 5). The absence of ionized phosphate group leads to several peculiarities of PDE monoamides in respect to BME monoami5552
R1
R2
Rc3d'
-dT 12.08 -dT(Ac) 10.85 11.0 -dT(Ac) 9.05 9.20 -dT(Ac) 2.8 2.6 -dT(Ac) 5.1 4.8 -Et 8.6 8.4 2-ClPh- -2.25 -2.75 -Et -7.25 -7.45 -Et -10.95 -11.10 4-ClPh 15.51 -15.60
olve Ref
10 [MeO)2Tr]dTT
(Tr)dTH2N(Tr)dTC6H NIi'iH4 (Tr)dT(C H )NHC(O)C6H 1N 5V (Tr)dT6l 1 6 (Tr)dT6'H6_H BhiH7 (MeOTr)dT8 (Tr)dTimidazole99 (Tr)dTtriazoletriazole*) 1,4-Dioxane
1 2 3
dT-
H2N-
D 0 38
By 43 *) 6 By 44 *) 6 *) 6
Py 42 Py 37
iy
42
*) 33
des. The comparison of 31p chemical shifts of PDE monoamides with alkylamide and anilide groups with corresponding PTE let us to conclude that the influence of nitrogen atom (or NH group) leads to downfield shift of 31p signal (10-13ppm; cp. chemical shifts of compounds 3.5 and 5.3, 3.8 and 5.4). The PDE derivatives containing N-phosphorylurea fragment can be considered formally as PDE monoamides (compound 5.5). The comparison of their chemical shifts with those of PTE shows that the substitution of -OAlk groups by -NR-C(O)-NHR ones leads to downfield 31P signal shift (7-8ppm; cp, chemical shifts of compounds 3.5 and 5.5). The 31P resonance region of PDE imidazolides (compound 5.8) is shifted in whole downfield in respect to that for PME imidazolides (compound 4.8), but the resonance region of PDE triazolides (e.g. compound 5.9) coincides practically with that of PME triazolides (e.g. compound 4.9). In the last case the substitution of nucleoside group by 4-chlorophenyl one leads (as in the case of PDE and PTE) to upfield 31P signal shift (4-5ppm; cp.chemical shifts of compounds 5.9 and 5.10). The individual signals of diastereomers can be observed practically in all cases of PDE monoamides. Diamides of phosphate monoesters (PME diamides: terminal phosphate diamides of mono- and oligonucleotides, Table 6). The comparison of chemical shifts for diphenyl ester of pdT(Ac) (compound 3.4) with dianilide derivatives of mono- and oligonuc5553
R1
R2
R3
cf1
62
-
Solvent Ref .
3? 4
6
5V
ThIHPhIWH-dT(Ac) 2. 9 (Tr)dT- imidazole- imidazole- -11.7 (Tr)dT- imidazole- PhCH2NH2.75 2.88 -dT(Ac) imidazole- C H NH2.33 2.49
?Tr) dT-
triazole-
PhCH2NH-
tBillole-
-16.8
-0.1 -0.4
_,,_ _,,-,,-,,-
_,,_
Py
40 6
6 6 6 6
leotides (compound 6.1) shows that the influence of two nitrogen atoms leads to the downfield 31p signal shift (15ppm). The chemical shifts values of compounds 3.4, 5.7 and 6.1 (or 3.4, 3.8, 5.4 and 6.1) shows that the substitution of one oxygen atom by nitrogen one leads to the downfield shift (9-lOppm) and substitution of the second oxygen 5-6ppm only. Hence, non-additivity of the effect of nitrogen atoms in PME diamides has been observed. In the case of mixed diamides (compounds 6.3, 6.4 and 6.6) and diimidazolide of (Tr)dTp (compound 6.2) the substituent effects are almost additive, what follows from the chemical shifts values for compounds 3.5, 5.5, 5.9, 6.6 and also 3.5, 5.8, 6.2 and triimidazolidephosphate (6'= -16.3ppm, [45]). Mixed anhydrides of nucleotides with carbon acids (Table 7). The formation of one anhydride bond with carbon acid can be noted to be accompanied with upfield shifts of the signals of both terminal and internucleotide phosphorus atoms (8-1Oppm; cp. chemical shifts of compounds 7.2 and 1.4). The formation
Table 7 chemical shifts of mixed anhydrides of nucleotides with carbon acids (R1 )(R20)P(O)OC(O)(R3)
31p
R1 Ho_
R d"| -Me-8.6
-dT(Ac) -dT
-dT(Ac) -dT(Ac)
-Ms -Ms
-dT(Ac)
d _
Solvent
Ref.
46 6 47
-Py -1n-,,_
-,-tl-
-,,_
6 6
29
derivatives
nuoleotides
| R2
(R1)P,,(O)(OR2)OBPo(O) OR3)(R
R
Ref. z3. 1 1 z -10.84 -8.54b) 22.6 12 HO-11.26 -7.02a) 23.6 12 H2 -dT H0. 17-20 HO10.3 -10.3c) -dT(Ac) -dT(Ac) 03 -11.2 -16.8c) 17.0 18 HO4-NO Ph -dT(Ac) 04 0-11.8 -19.7c) 18.1 48 -A HO5' SC(M)- -A 0-10.8 -17.3a) F49 6 H-+ HO-A 1.29 -11.59a)20.0 50 Nic+7* 1 -11.2 -6.8 17.5 25 -dT (Ac) T(Ac) 0ph_rH-dT (Ac) dT (Ac) O-12.4 -1.2c) 18.5 25 '9**O H11NH-11.5 -5.15c) 16.4 19 CEN HC(O) -dT(Ac) T(Ac) HO 6 -11.5 -5.60 20 H-OA -0.8d) 51 11.3 1 H6H112- -dT(Ac) -dT(Ac HO- -11.2 -12.0c) 17.0 52 12 (Tr)dT11.2 -12.4 17.0 6 -dT(Ac) -dT(Ac) HO- -12.0 -16.4c) 17.0 25 13 * Ph-12.0 -16.7 17.0 6 1i0 Phr17.0 -12.2c) 16.6 25 147 Tr d1-d(Ac 29,53 (Tr dTO- -dT(Ac) dT(Ac)(Tr)dTO0 -13.8 l5v 35 6v 4-ClPhO- -dT(Ac) -dT(Ac)4-ClPh (19.0,19.2,19.5) 35 7ir (Tr)dTO- 4-ClPh- 4-ClP- (Tr)dT (19.6t19.9,20.2) PhNH- -dT(Ac) -dT(Ac) PhNH40 -(7.0-7.4) 8'1 H_ -OA -10.14 -6.47d) 51 H19(H&)2PF(O)NHT) To diastereomers icotinaJide adenine dinucleotide; Tw) a) In H20, pH7.4; b) In TJU,-lgE[HJ7.4; o) In Py; d) In D20,pDlO
, -T
Nq R |
Rn
61H1N-
of two anhydride bonds leads to the 31p signal shift of terminal phosphate on 17-18ppm in the same direction (cp. chemical shifts of compounds 7.4 and 1.4), i.e. the effect can be considered as additive. From these data follows that the nature of carbon acid has no essential influence on chemical shifts values. The comparison of chemical shifts for compounds 7.5 and 7.3 shows the substitution of -OAlk group by -NHPh leads to downfield 31P signal shift (5-6ppm), i.e. the effect is the same as in the case of transition of PTE to PDE monoamides. Pyrophosphate derivatives of nucleotides (Table 8),31p NMR spectra of non-symetrical derivatives can be assigned as a rule to AB-type spin-systems, The difference of R.and P chemical shifts (and also values of coupling constants JPOP ) depends on the nature of substituents bonded with them, the acidity of medium and solvent effect. In some cases sufficiently resolved
5555
T
2
Iffo_
HOleO-
R2 R3 IRR
-H
-H
1pR- d|PP dE | Solv. -11.43 -_22.83 -771 20. -dA -13.47 2 PM -23.46 -10.4 28.3 24.6 a) -A -12.7 -23.6 -11.2 DlKSO -11.45 -22.66 -7.33 19.8 19.8 H20 pH7
-12.25 -23.17 -10.6425.6 -12.7 -24.0 -11.5
23.6
a? b)
ef,
12 54 12 12 55 55
4 5 6 7 8 9
0 I
HO-
-A -A -A -A -A -A dT(Ac -H -H -A
-14.0 -24.5 -19.7 c) -11.8 -22.0 -3.6 22.5 22.5 DMSO:Py 6 -11.4 -23.2 -10.2 H20,pl1 56 -11.4 -22.1 -4.2 55 Py -10.11 -22.6 -17.5 J 935Hs H20,p11 49 -11.45 -21.6 -11.5 1 0 117.0 Py 21
-11.1 -22.8 -22.8J
H20p 857
31p
No
1 2 3 4 5
Compound-
4L~
ef
58 59 60
7 8 9 10 11 12
43,5 (HO)P(S)(OH)(OA) 56.8 (AO)P(S) (OH) (OA) (MeOTr)dTOP(S) (OH) (2-ClPhO) 52.94 bzA2'-(2-NO Ph)pJP(S)(OCH )bzA(Bz) 71.2 (HO) (S)(8H)O(HO)P(O)(3A) 11.1 42.1 (HO)PO )(OH)O(HO)P(S)(OA) (HO) ( (OH)O(HO)4(6O(HO)P(O)(OA) 10.6 (HO) (O)(OH)O(HO)P!(S)O(HO)3aO)(OA) 11.4 11.4 (HO)P(O)(OH)O(HO)P(O)O(HO)P(S)(OA) 43.4 21.6 b (AO)P(O)(SCH. )(OH)
59
31.2 0.8 35. 19.6 29.0 -6. 6.5 273 -6. -t,- -,,-5. 27.5 205
58 58 49 58 58 61 62 62
(UO)P(Se)(0H3(OU)
KSiU(2'-Si)P(Se)P(Et)]pU(si)2p)
P0
1 2
Compound
dp ,) JI | J, iRef
R2
-H
pH
R-i
-
-A
6
11
63 63
63
49
____
-A
-A -A -A -A -A
-H -H -H -H -CH3 -H
CH2
CC2 CHP CF2 CH2 0
4 5 6 7 8
63
26.0 8.5 64 30.5 17.7 64 28.0 16.0 64 32.0 57.0 64 26.0 8.5 63 63
14.412.1 2.4 8.6 2.4 8.6 2.2 4.2 6.8 17.7 5.1 6.8
compounds 3.6 and 10.4). If the sulphur substitutes the estertype oxygen the downfield 31p signal shifts -20ppm has been observed (cp. chemical shifts of compounds 2.1 and 10.10). These differences of chemical shifts values can be used for determination of the position of sulphur. The spectra analysis of sulphur containing nucleoside 5'-di(and tri)phosphates shows that the presence of sulphur leads to the changes in chemical shifts only for phosphorus atoms directly bonded with it; the other chemical shifts remain practically the same. The 31P chemical shifts of some nucleotide derivatives containing P=Se bond have been also known. The region of 31p resonance of these derivatives has been shifted to high field in respect to sulphur containing analogues ( cp.chemical shifts of compounds 10.11 and 10.2 ). Nucleotide derivatives with P-C bond (Table 11).The 31p Signals of nucleotide phosphonate derivatives have been shown to be shifted downfield (16-32ppm; depending on the medium influence and structure of compounds) in respect to corresponding phosphate derivatives (cp. chemical shifts of compounds 11.1
5558
31p
01
[CM0
N R2 t R3 )2Tr]dT- -CH3 1
1R
3)2
146.0
147.7148
140.8
145.4
139.6
167.2
65
65
and 8.3, 11.2 and 8.1, 11.3 and 9.2). The substitution of hydaby chlorine or fluorine leads rogens in fragment Pp-CH2- Pto the upfield 31P signal shift (4-8ppm) and to changes in coufrom 8.5 to 57 Hz (cp. chemical shifts pling constants 2J of compounds 11.3-11.7). and (Table 12).Recently the daPen ta on 31P chemical shifts of some phosphite nucleotide analogues have been obtained with the development of "phosphite"l method of oligonucleotide synthesis. The 31P signals of these compounds have been shifted downfield in respect H3P04 being placed at 120-170ppm region[6].The data of the Table 12 shown qualitatively the 31P chemical shifts of nucleotide phosphite analogues to be determined by the regularities established for nucleotides - derivatives of orthophosphoric acid. However the reliable conclusions in that case cannot be made because of the lacking of additional data. Kucleoside 3' , 5' -cyclophosphate derivatives (Table 13) .These compounds have been considered separately because of upfield shift of 31P signals of their PDE (-1ppm) in respect to acyclic PDE (cp. chemical shifts of compounds 13.1 and 2.6, 13.2 and 2.15). The greater difference of chemical shifts values (up to 3-5ppm) has been observed between 3',51-cyclic and acyclic PTE, monoamides of PDE and others (cp. chemical shifts of compounds 13.5 and 3.6, 13.7 and 5.4, 13.8 and 10.2).The4dfor diastereomers of 3',5'-cyclic derivatives of PTE have been found to increase substantially in respect to acyclic ones (cp.d'1 and d2 of compounds 13.5 and 3.6, 13.7 and 5.4, 13.8 and 10.2, 13.10 and 12.2).
2i
5559
31
X , R
NO
R1
d'4
Medium
_,,_ DMSO-d -DMSO(1:1) DhSO-d6 -,(CD )2CO DMSO-d6 Py -,,DMSO (CD ) CO
Ref.
1
2 3
HOHOMeO-
4 5
0 Thy- H- -2.05 O Ade- HO- -1.58 0 Ade- HO- -4.02 -5.27 -2.47 -3.46 0 Ade- HO- -4.43 -6.14 0 Thy- H- -4.7 -6.7 7.53 6.91 O Thy- H0.64 -3.35 O Thy- HS Thy- H- 54.73 52.11 O Thy- H- 30.2 26.2 *) Thy- H- 129.5 123.2
D20, pD7
H- 144.9 139.6
ED13
44 44 70 68 68
7 7 66 67 67 .68 69
r *) Lone pair Nucleoside 2',3'-cyclophosphate derivatives (Table 14). The area of P chemical shifts for these compounds is quite different from those for nucleotide derivatives considered above. 2',3'-Cyclic PDE have been shifted downfield (-20ppm) in respect to acyclic PDE (cp. chemical shifts of compounds 14.1 and 2.11). The similar shifts have been observed for thiophosphate triesters (cp. chemical shifts of compounds 14.4 and 10.2).The treatment of (Tr)Up with N,Nt-dicyclohexylcarbodiimide in pyridine leads to the formation of 2',3'-cyclic derivative (compound 14.2) and further to compound 14.3, which characterizing by two individual signals in 31p NMR spectrum at 24.9 and 24.Oppm[6].The
Table 14
31p
NO
2
R1
R2
-OH Tr- Ura3V Tr- Ura- -N(C6H11 )C(O)NHC6H11 -OH 4 H- Ura-OH 5 H- Cyt-
73
5560
NO
1
H
R1
_-H
d- d4Ji.XMedium
-13.70 -14.45 27.6
DIF
23
74
-dT(Ac)
-13.00
-14.40
Py(TPS)
23
latter correspond to two possible diastereomers. Nucleoside 3'.5'-cyclopyrophosphates and their derivatives (Table 15).These compounds form the special group, because of the substantial difference between their spectral data and those for corresponding substituted pyrophosphates. The main difference consists in upfield shift of P,and particularly P signals (u-. 2ppm, PF-2.5-4.0ppm, cp. chemical shifts of compounds 15.2 values has been also observed. and 8,12)oThe increase of The chemical shifts and coupling constants of these compounds depend substantially on the acidity of medium and solvent effect (see chemical shifts of compounds 15.1 and 15.2).The substitution of -dT(Ac) by phenyl group leads to upfield shift of corresponding phosphorus atom (C5ppm) as in the cases of PDE and PTE [61. Adenosine 5'-trimetaphosphate (Table 16).The 31p spectrum of this compound can be assigned to ABC-type of spin-systems in the region of 31P resonance of dianhydride phosphate fragments. Our experiments[6]have been shown that the small chemical shift and coupling constant differences being caused by medium effects substantially change the picture of 31p spectrum of adenosine 5'-trimetaphosphate. The analysis of 31p chemical shifts values in the Tables 1-16 let us to describe the influence of some substituents on 31p chemical shifts of nucleotide derivatives (Table 17). The group -OAlk (Alk A CH3, CH2CC13) has been chosen as the replaced one. chemical shifts changes can be The found tendencies of used for purpose of identification of structure of nucleotide
2Jp0p
31P
5561
p chemical shifts and coupling constants adenosine 5'-trimetaphosphate derivatives and their phosphonate analogues L N
H
n 0P 0'H
A
Ref. 75 6
76
76
X Y JPd I jB
O
1i Q
-22.9 -24.2 -24.6 23.5 23.7 -23.7 -24.0 24.7 21.9 19.5 -1.9 -24.8 10.0 20.0 20.0
J) 22.9
Solvent
Py DMS0 Py
-
Table 17 Substituent effects on 31P MIR chemical shifts of nucleotide derivatives (ppm)*) TI [CAlk [0A-T]Or ( Substituent o.=P-ONuc O=P-ONuc o=P-OITuc lI--OR OH xOAlK,
R=Alk,Ar,Nuc
~0
~O
_(o.5-1.0)
(0.9-1.8)
(3-4)
-
-(1.5-2.5) -(0.5-1.0)
-0-g-RI(R'=Alk,Ar)
-NHER', NR&(R'=Alk)
-NHAr
-(4.0-4.7)
-(6-7)
-(4-5)
--10
-(6-7)
-14
-
(6-7)
|NR'--NR' (R =C 6H11
0
-
-(7-8) () -(4-5)
(-1)
(10-12)
(-5)
(-5)
(--10)
CR,-"H 3) X= N
-(9-10) -(9-10)
-(2-3)_
-(4-5) -(8-9)
(--15)
-(20-24)
OR'(R'=HvAlk,Ar- -(10-12)
R"= -,-, NucC
-(10-12) A
jAElK65562
CH3, CH2CC13
Nucleic Acids Research AcknowledRements We thank Academician D.G. Knorre and Dr. A.S. Levina for their critical readings of the manuscript and many helpful suggestions, Dr. V.F. Zarytova, E.M. Ivanova and V.P. Starostin for giving of some compounds, Mr. S.A. Krupoder and Mrs. E. Efirnova for the translation of manuscript into English. REFERENCES 1. Burt,C.T.,Cohen,S.M.and Barany,M.(1979) Armu. Rev. Biophys. and Bioeng., 8, 1-25 2. Mildvan,A.S (1977) Accounts Chem. Res., 10, 246-252 3. Radda, G.K., Seeley,P.J. (1979) Annu. Rev. Physiol., 41, 749-769 4. Ugurbil,K., Shulman,R.G., Brown,T,R. (1979) Biological Applications of Magnetic Resonance, pp. 537-589, Academic Press, New York 5. O'Neill,I.K., Richards,C.P. (1980) Annual Reports on MlAR Spectroscopy, 10A, pp. 134-236, Academic Press, New York 6. Lebedev,.V., Rezvukhin,A.I. (1983) Bioorgan. Khimiya, 9, 149-185 7. Cozzone,P.J., Jardetzky,O. (1976) Biochemistry, 15,48534859 8, Akasaka,K., Yamada.A., Hatano,H. (1975) FEBS Lett., 53,
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